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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.334 C 0.167 G 0.167 T 0.334 

MOTIF 1-GAGAAGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 2.5e-002
 0.010196 0.000530 0.988213 0.001062
 0.997878 0.000530 0.000530 0.001062
 0.001062 0.000530 0.975282 0.023127
 0.997878 0.000530 0.000530 0.001062
 0.997878 0.000530 0.000530 0.001062
 0.001062 0.022595 0.696656 0.279687
 0.001062 0.997347 0.000530 0.001062
 0.038174 0.000530 0.951101 0.010196

MOTIF 2-AAACGTAK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.994071 0.001481 0.001481 0.002967
 0.994071 0.001481 0.001481 0.002967
 0.870759 0.001481 0.063137 0.064623
 0.002967 0.992586 0.001481 0.002967
 0.002967 0.001481 0.992586 0.002967
 0.002967 0.001481 0.063137 0.932415
 0.808905 0.001481 0.063137 0.126477
 0.126477 0.001481 0.433271 0.438771

MOTIF 3-CCCTTCTM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.003152 0.992122 0.001574 0.003152
 0.003152 0.992122 0.001574 0.003152
 0.003152 0.992122 0.001574 0.003152
 0.003152 0.001574 0.001574 0.993701
 0.003152 0.132807 0.001574 0.862467
 0.003152 0.992122 0.001574 0.003152
 0.003152 0.001574 0.001574 0.993701
 0.399411 0.595864 0.001574 0.003152

MOTIF 4-ARATTTAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.5e-001
 0.995202 0.001199 0.001199 0.002401
 0.501042 0.199676 0.296882 0.002401
 0.995202 0.001199 0.001199 0.002401
 0.002401 0.001199 0.001199 0.995202
 0.002401 0.136067 0.255292 0.606240
 0.002401 0.001199 0.001199 0.995202
 0.995202 0.001199 0.001199 0.002401
 0.002401 0.001199 0.051093 0.945308

MOTIF 5-ATTGAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 6.7e-001
 0.779592 0.021826 0.196716 0.001866
 0.001866 0.000931 0.000931 0.996271
 0.001866 0.000931 0.044414 0.952789
 0.001866 0.000931 0.995337 0.001866
 0.863423 0.000931 0.095001 0.040644
 0.723441 0.078613 0.000931 0.197014
 0.950312 0.016985 0.004492 0.028211
 0.911666 0.016985 0.002668 0.068682

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17829.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17829/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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