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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.36 C 0.14 G 0.14 T 0.36 

MOTIF 1-CATTTAAM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 2.4e-002
 0.001084 0.997412 0.000420 0.001084
 0.786928 0.065561 0.146427 0.001084
 0.001084 0.000420 0.000420 0.998077
 0.001084 0.265202 0.000420 0.733294
 0.236055 0.063032 0.072675 0.628237
 0.956379 0.042117 0.000420 0.001084
 0.977228 0.000420 0.021268 0.001084
 0.474199 0.311314 0.121808 0.092678

MOTIF 2-ATACAACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 6.7e-001
 0.866732 0.054245 0.054245 0.024778
 0.152332 0.054245 0.001070 0.792353
 0.866561 0.107591 0.001070 0.024778
 0.002766 0.993399 0.001070 0.002766
 0.888744 0.001070 0.054245 0.055940
 0.888744 0.001070 0.054245 0.055940
 0.002766 0.993399 0.001070 0.002766
 0.163063 0.107591 0.001070 0.728276

MOTIF 3-CCCATAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.003670 0.991239 0.001420 0.003670
 0.003670 0.991239 0.001420 0.003670
 0.003670 0.991239 0.001420 0.003670
 0.922918 0.001420 0.071992 0.003670
 0.003670 0.001420 0.001420 0.993489
 0.640178 0.071992 0.142790 0.145040
 0.922918 0.071992 0.001420 0.003670
 0.710521 0.001420 0.071992 0.216067

MOTIF 4-CTTAAYAH STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 8.3e-001
 0.001424 0.996600 0.000551 0.001424
 0.001424 0.196825 0.000551 0.801200
 0.001424 0.000551 0.000551 0.997473
 0.997473 0.000551 0.000551 0.001424
 0.828563 0.000551 0.169461 0.001424
 0.001424 0.326923 0.126426 0.545226
 0.812823 0.121443 0.064310 0.001424
 0.241090 0.316409 0.032008 0.410494

MOTIF 5-AAAATATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.941864 0.012682 0.012682 0.032773
 0.941864 0.012682 0.012682 0.032773
 0.941864 0.012682 0.012682 0.032773
 0.941864 0.012682 0.012682 0.032773
 0.032773 0.012682 0.012682 0.941864
 0.941864 0.012682 0.012682 0.032773
 0.032773 0.012682 0.012682 0.941864
 0.032773 0.012682 0.921773 0.032773

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17806.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17806/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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