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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-AGAAGAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 220 P= 3.6e-008
 0.999460 0.000167 0.000167 0.000206
 0.000206 0.000167 0.999420 0.000206
 0.992559 0.000167 0.001892 0.005382
 0.838553 0.021003 0.140238 0.000206
 0.000206 0.000167 0.999420 0.000206
 0.994284 0.000167 0.000167 0.005382
 0.999460 0.000167 0.000167 0.000206
 0.000206 0.000167 0.999420 0.000206

MOTIF 2-CARCARCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 83 P= 3.7e-002
 0.000788 0.997788 0.000637 0.000788
 0.997938 0.000637 0.000637 0.000788
 0.264867 0.119374 0.487736 0.128023
 0.000788 0.756400 0.040206 0.202606
 0.938617 0.000637 0.000637 0.060108
 0.507640 0.020390 0.403653 0.068317
 0.000788 0.997788 0.000637 0.000788
 0.997938 0.000637 0.000637 0.000788

MOTIF 3-CCTCCKCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.0e-001
 0.001437 0.995963 0.001163 0.001437
 0.073526 0.923874 0.001163 0.001437
 0.001437 0.272192 0.001163 0.725208
 0.001437 0.995963 0.001163 0.001437
 0.001437 0.995963 0.001163 0.001437
 0.109628 0.091273 0.395406 0.403692
 0.001437 0.779349 0.001163 0.218051
 0.001437 0.741872 0.073251 0.183439

MOTIF 4-ACGCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.8e-001
 0.993429 0.002030 0.002030 0.002510
 0.002510 0.992950 0.002030 0.002510
 0.002510 0.002030 0.887083 0.108377
 0.002510 0.867063 0.064974 0.065453
 0.861506 0.107898 0.002030 0.028566
 0.002510 0.930006 0.002030 0.065453
 0.803991 0.002030 0.002030 0.191948
 0.002510 0.992950 0.002030 0.002510

MOTIF 5-ATTGTTTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.934218 0.020327 0.020327 0.025127
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.020327 0.929418 0.025127
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.020327 0.020327 0.934218
 0.934218 0.020327 0.020327 0.025127

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17385.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17385/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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