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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-TATCGATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 4.8e-002
 0.000811 0.152097 0.000613 0.846479
 0.997963 0.000613 0.000613 0.000811
 0.035438 0.080519 0.002501 0.881543
 0.010680 0.987897 0.000613 0.000811
 0.000811 0.000613 0.987897 0.010680
 0.881543 0.002501 0.080519 0.035438
 0.000811 0.000613 0.000613 0.997963
 0.846479 0.000613 0.152097 0.000811

MOTIF 2-CTGTTATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 5.5e-002
 0.195929 0.659569 0.000719 0.143784
 0.070700 0.079785 0.121347 0.728168
 0.000950 0.000719 0.997381 0.000950
 0.000950 0.000719 0.039635 0.958696
 0.116863 0.195922 0.000719 0.686496
 0.928199 0.070132 0.000719 0.000950
 0.075040 0.000719 0.100477 0.823765
 0.000950 0.997381 0.000719 0.000950

MOTIF 3-AAAATACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 1.2e-001
 0.859160 0.001064 0.069661 0.070115
 0.927868 0.001064 0.001064 0.070004
 0.876195 0.001064 0.001064 0.121678
 0.962222 0.001064 0.035307 0.001407
 0.001407 0.001064 0.001064 0.996466
 0.938870 0.058660 0.001064 0.001407
 0.001407 0.996123 0.001064 0.001407
 0.001407 0.837442 0.001064 0.160088

MOTIF 4-AGTGTGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 77 P= 6.3e-001
 0.956350 0.042280 0.000590 0.000780
 0.145810 0.057643 0.795766 0.000780
 0.211757 0.000590 0.133847 0.653805
 0.038898 0.000590 0.959732 0.000780
 0.000780 0.000590 0.000590 0.998040
 0.000780 0.000590 0.762142 0.236488
 0.708964 0.082996 0.207260 0.000780
 0.000780 0.997849 0.000590 0.000780

MOTIF 5-CTGTTARG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 7.6e-001
 0.001181 0.996746 0.000893 0.001181
 0.001181 0.000893 0.058382 0.939545
 0.001181 0.000893 0.996746 0.001181
 0.001181 0.000893 0.058474 0.939452
 0.087553 0.000893 0.000893 0.910661
 0.968289 0.000893 0.029637 0.001181
 0.558183 0.029730 0.410907 0.001181
 0.001181 0.000893 0.996746 0.001181

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17186.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17186/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.56 seconds
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