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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-CCACYTGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 192 P= 1.3e-006
 0.161245 0.775052 0.039843 0.023860
 0.124821 0.803296 0.012586 0.059297
 0.984899 0.010621 0.004203 0.000277
 0.012610 0.986861 0.000252 0.000277
 0.053773 0.560751 0.012586 0.372889
 0.000277 0.000252 0.000252 0.999219
 0.000277 0.014918 0.984529 0.000277
 0.038493 0.115816 0.000252 0.845438

MOTIF 2-AAACGRAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.995483 0.001459 0.001459 0.001599
 0.705576 0.001459 0.291366 0.001599
 0.995483 0.001459 0.001459 0.001599
 0.001599 0.995343 0.001459 0.001599
 0.001599 0.001459 0.995343 0.001599
 0.511538 0.001459 0.272623 0.214379
 0.995483 0.001459 0.001459 0.001599
 0.663596 0.043851 0.290954 0.001599

MOTIF 3-ATAAATAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.962996 0.034592 0.001151 0.001261
 0.001261 0.001151 0.068139 0.929448
 0.962996 0.001151 0.001151 0.034701
 0.775818 0.019169 0.001151 0.203862
 0.962943 0.001151 0.001151 0.034755
 0.001261 0.001151 0.068139 0.929448
 0.912620 0.068248 0.017871 0.001261
 0.203862 0.082272 0.611961 0.101906

MOTIF 4-CGCTGACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.8e-001
 0.001324 0.961038 0.036314 0.001324
 0.071649 0.036314 0.785056 0.106981
 0.071536 0.907016 0.020124 0.001324
 0.001324 0.036314 0.001208 0.961153
 0.001324 0.071533 0.911286 0.015857
 0.914119 0.071647 0.012910 0.001324
 0.142428 0.784827 0.036314 0.036430
 0.735872 0.036314 0.141745 0.086068

MOTIF 5-CGCCCTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.001459 0.902239 0.017346 0.078956
 0.001459 0.001332 0.840757 0.156453
 0.078956 0.840819 0.001332 0.078893
 0.017474 0.885890 0.001332 0.095305
 0.078956 0.879567 0.040018 0.001459
 0.117892 0.001332 0.017346 0.863430
 0.040207 0.879505 0.078828 0.001459
 0.040145 0.040018 0.040018 0.879819

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17181.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17181/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.78 seconds
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