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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.345 C 0.155 G 0.155 T 0.345 

MOTIF 1-CATTCAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 8.4e-001
 0.061194 0.774443 0.006949 0.157413
 0.935991 0.006949 0.000727 0.056332
 0.034149 0.065787 0.000727 0.899337
 0.001619 0.014194 0.000727 0.983460
 0.023719 0.760292 0.164113 0.051877
 0.950930 0.014194 0.000727 0.034149
 0.933403 0.018255 0.014194 0.034149
 0.066783 0.118114 0.033257 0.781846

MOTIF 2-AAATGATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 9.7e-001
 0.934205 0.031443 0.002065 0.032286
 0.811311 0.062397 0.000688 0.125603
 0.892378 0.006570 0.000688 0.100364
 0.001531 0.062298 0.052417 0.883754
 0.001531 0.000688 0.996251 0.001531
 0.997094 0.000688 0.000688 0.001531
 0.001531 0.099521 0.124307 0.774641
 0.078688 0.035174 0.056644 0.829494

MOTIF 3-AACCACTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.947955 0.044852 0.000981 0.006212
 0.907972 0.000981 0.088864 0.002184
 0.002184 0.994652 0.000981 0.002184
 0.108606 0.756475 0.088864 0.046054
 0.951984 0.000981 0.000981 0.046054
 0.002184 0.994652 0.000981 0.002184
 0.031431 0.088864 0.000981 0.878724
 0.625026 0.019142 0.177315 0.178517

MOTIF 4-TTGGAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003478 0.001563 0.001563 0.993397
 0.003478 0.001563 0.001563 0.993397
 0.003478 0.001563 0.991482 0.003478
 0.003478 0.001563 0.991482 0.003478
 0.993397 0.001563 0.001563 0.003478
 0.712538 0.001563 0.001563 0.284337
 0.993397 0.001563 0.001563 0.003478
 0.993397 0.001563 0.001563 0.003478

MOTIF 5-TAAMTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.0e+000
 0.003070 0.001379 0.001379 0.994172
 0.994172 0.001379 0.001379 0.003070
 0.861329 0.001379 0.134221 0.003070
 0.639604 0.355947 0.001379 0.003070
 0.003070 0.001379 0.001379 0.994172
 0.994172 0.001379 0.001379 0.003070
 0.903767 0.001379 0.091784 0.003070
 0.994172 0.001379 0.001379 0.003070

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16815.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG16815/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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