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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.3 C 0.2 G 0.2 T 0.3 

MOTIF 1-GTAAACAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.2e-001
 0.002455 0.001630 0.993460 0.002455
 0.002455 0.001630 0.001630 0.994285
 0.856911 0.139004 0.001630 0.002455
 0.930786 0.001630 0.065129 0.002455
 0.914212 0.058260 0.001630 0.025898
 0.002455 0.993460 0.001630 0.002455
 0.880843 0.001630 0.001630 0.115897
 0.823572 0.001630 0.001630 0.173169

MOTIF 2-CAACACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.2e-001
 0.001928 0.994863 0.001280 0.001928
 0.731927 0.001280 0.001280 0.265512
 0.906555 0.001280 0.001280 0.090884
 0.001928 0.950385 0.001280 0.046406
 0.831746 0.120568 0.001280 0.046406
 0.095150 0.901641 0.001280 0.001928
 0.001928 0.001280 0.045758 0.951033
 0.090884 0.090236 0.816951 0.001928

MOTIF 3-WATCGATW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 1.7e-001
 0.336585 0.066052 0.000915 0.596448
 0.899228 0.000915 0.098480 0.001378
 0.001378 0.000915 0.000915 0.996793
 0.007955 0.846281 0.080510 0.065254
 0.065254 0.080510 0.846281 0.007955
 0.996793 0.000915 0.000915 0.001378
 0.001378 0.098480 0.000915 0.899228
 0.596448 0.000915 0.066052 0.336585

MOTIF 4-ACTGTACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.967914 0.001794 0.001794 0.028499
 0.002702 0.992803 0.001794 0.002702
 0.065019 0.001794 0.001794 0.931394
 0.127536 0.027591 0.842171 0.002702
 0.127536 0.001794 0.064111 0.806559
 0.869077 0.064111 0.001794 0.065019
 0.002702 0.992803 0.001794 0.002702
 0.002702 0.001794 0.001794 0.993711

MOTIF 5-GTCACACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.002004 0.047557 0.948435 0.002004
 0.094755 0.001330 0.001330 0.902584
 0.094605 0.762934 0.140457 0.002004
 0.949109 0.001330 0.001330 0.048230
 0.094605 0.902060 0.001330 0.002004
 0.902882 0.047557 0.047557 0.002004
 0.021140 0.975525 0.001330 0.002004
 0.715726 0.001330 0.001330 0.281613

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1647.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG1647/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.93 seconds
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