********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-CCGGAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.1e-002
 0.057711 0.806863 0.065686 0.069741
 0.000937 0.997132 0.000993 0.000937
 0.081487 0.000993 0.916583 0.000937
 0.000937 0.000993 0.760434 0.237635
 0.997076 0.000993 0.000993 0.000937
 0.000937 0.000993 0.997132 0.000937
 0.913453 0.000993 0.000993 0.084560
 0.613487 0.042083 0.271514 0.072916

MOTIF 2-CCCCTTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.001731 0.945251 0.001836 0.051182
 0.100792 0.846190 0.051287 0.001731
 0.001731 0.994701 0.001836 0.001731
 0.001731 0.994701 0.001836 0.001731
 0.001731 0.200920 0.001836 0.795513
 0.001731 0.001836 0.026561 0.969872
 0.022203 0.870586 0.022307 0.084905
 0.100792 0.796580 0.100896 0.001731

MOTIF 3-ATACACAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 8.8e-001
 0.945423 0.001330 0.037160 0.016087
 0.001255 0.024358 0.001330 0.973057
 0.671753 0.037160 0.218056 0.073030
 0.016087 0.945498 0.037160 0.001255
 0.924425 0.037160 0.037160 0.001255
 0.116395 0.773009 0.001330 0.109266
 0.960255 0.037160 0.001330 0.001255
 0.037085 0.109342 0.037160 0.816413

MOTIF 4-TACGGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.038660 0.016849 0.069343 0.875148
 0.895744 0.064210 0.038738 0.001308
 0.076011 0.809119 0.113562 0.001308
 0.038660 0.001387 0.958646 0.001308
 0.038660 0.001387 0.883942 0.076011
 0.836389 0.011449 0.038738 0.113423
 0.883864 0.076090 0.001387 0.038660
 0.771267 0.113622 0.001387 0.113724

MOTIF 5-CCACGTTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002473 0.780347 0.002621 0.214559
 0.002473 0.921814 0.073241 0.002473
 0.992284 0.002621 0.002621 0.002473
 0.002473 0.709728 0.073241 0.214559
 0.002473 0.073241 0.921814 0.002473
 0.002473 0.002621 0.002621 0.992284
 0.214331 0.073241 0.002621 0.709806
 0.002473 0.002621 0.992433 0.002473

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1621.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG1621/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.72 seconds
********************************************************************************