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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.349 C 0.151 G 0.151 T 0.349 

MOTIF 1-AATTGGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.995642 0.001013 0.001013 0.002332
 0.809991 0.047388 0.140289 0.002332
 0.002332 0.001013 0.093913 0.902742
 0.048708 0.001013 0.093913 0.856366
 0.002332 0.001013 0.994322 0.002332
 0.002332 0.001013 0.994322 0.002332
 0.809241 0.001013 0.001013 0.188733
 0.189036 0.125390 0.047388 0.638186

MOTIF 2-CTRAGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 3.0e-001
 0.002402 0.994152 0.001043 0.002402
 0.002402 0.001043 0.144807 0.851747
 0.578396 0.081385 0.337816 0.002402
 0.995511 0.001043 0.001043 0.002402
 0.002402 0.001043 0.994152 0.002402
 0.947744 0.048811 0.001043 0.002402
 0.947744 0.001043 0.048811 0.002402
 0.899900 0.096655 0.001043 0.002402

MOTIF 3-GCGCCACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.156701 0.001121 0.839597 0.002581
 0.002581 0.993717 0.001121 0.002581
 0.002581 0.001121 0.993717 0.002581
 0.119946 0.876352 0.001121 0.002581
 0.002581 0.993717 0.001121 0.002581
 0.995177 0.001121 0.001121 0.002581
 0.105217 0.567195 0.052439 0.275148
 0.105217 0.736795 0.001121 0.156867

MOTIF 4-ATCTTAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 5.0e-001
 0.895115 0.065993 0.037253 0.001639
 0.001639 0.098791 0.000712 0.898858
 0.001639 0.996010 0.000712 0.001639
 0.080692 0.098791 0.003704 0.816812
 0.015129 0.014202 0.000712 0.969957
 0.867712 0.066098 0.014202 0.051987
 0.842069 0.105434 0.033300 0.019198
 0.807196 0.098791 0.000712 0.093300

MOTIF 5-TATATATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 5.0e-001
 0.316730 0.017785 0.006148 0.659336
 0.991622 0.005868 0.000760 0.001750
 0.001750 0.010950 0.024135 0.963165
 0.791461 0.083694 0.123095 0.001750
 0.001750 0.123095 0.083694 0.791461
 0.963165 0.024135 0.010950 0.001750
 0.001750 0.000760 0.005868 0.991622
 0.659336 0.006148 0.017785 0.316730

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1602.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG1602/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.70 seconds
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