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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.362 C 0.138 G 0.138 T 0.362 

MOTIF 1-ARACGTAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.4e-001
 0.928720 0.000676 0.000676 0.069927
 0.344274 0.034749 0.619195 0.001781
 0.708671 0.000676 0.000676 0.289977
 0.255461 0.679798 0.048854 0.015886
 0.051723 0.000676 0.945819 0.001781
 0.069927 0.034749 0.000676 0.894647
 0.982761 0.000676 0.000676 0.015886
 0.001781 0.034749 0.117000 0.846469

MOTIF 2-TAAAATGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 6.7e-001
 0.036305 0.085838 0.013848 0.864009
 0.862783 0.045124 0.007080 0.085012
 0.975042 0.012481 0.011309 0.001168
 0.762018 0.009692 0.089682 0.138608
 0.854345 0.144044 0.000443 0.001168
 0.001168 0.022784 0.000443 0.975605
 0.001168 0.000443 0.997220 0.001168
 0.583578 0.254546 0.069085 0.092790

MOTIF 3-ATGTAGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.992440 0.001632 0.001632 0.004297
 0.004297 0.001632 0.001632 0.992440
 0.004297 0.083822 0.907583 0.004297
 0.004297 0.083822 0.001632 0.910249
 0.992440 0.001632 0.001632 0.004297
 0.004297 0.001632 0.989774 0.004297
 0.251664 0.001632 0.577761 0.168943
 0.251664 0.001632 0.660216 0.086488

MOTIF 4-ATATTATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.8e-001
 0.942036 0.012509 0.012509 0.032945
 0.032945 0.012509 0.012509 0.942036
 0.942036 0.012509 0.012509 0.032945
 0.032945 0.012509 0.012509 0.942036
 0.032945 0.012509 0.012509 0.942036
 0.942036 0.012509 0.012509 0.032945
 0.032945 0.012509 0.012509 0.942036
 0.942036 0.012509 0.012509 0.032945

MOTIF 5-CTTAAGTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 94 P= 9.8e-001
 0.100886 0.816916 0.029773 0.052425
 0.087177 0.063937 0.043254 0.805633
 0.100918 0.086926 0.012328 0.799828
 0.788576 0.048596 0.047539 0.115289
 0.725642 0.103717 0.041935 0.128705
 0.085287 0.026509 0.831195 0.057009
 0.091466 0.077471 0.063771 0.767292
 0.113535 0.050870 0.057530 0.778065

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15710.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG15710/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.54 seconds
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