******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.295 C 0.205 G 0.205 T 0.295 MOTIF 1-ATTGAAAG STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 106 P= 1.9e-002 0.929959 0.006089 0.058064 0.005888 0.008911 0.027909 0.000406 0.962774 0.006268 0.001653 0.006089 0.985989 0.003456 0.004104 0.950533 0.041906 0.998604 0.000406 0.000406 0.000585 0.975236 0.008717 0.001666 0.014381 0.790515 0.109330 0.034849 0.065306 0.000585 0.096387 0.902444 0.000585 MOTIF 2-AATTGAAA STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 5.5e-002 0.994825 0.001504 0.001504 0.002168 0.994825 0.001504 0.001504 0.002168 0.002168 0.001504 0.001504 0.994825 0.027616 0.001504 0.001504 0.969376 0.002168 0.001504 0.994161 0.002168 0.885203 0.001504 0.001504 0.111789 0.907128 0.001504 0.001504 0.089865 0.994825 0.001504 0.001504 0.002168 MOTIF 3-GGTAAACA STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001 0.098353 0.073381 0.761050 0.067215 0.016481 0.028141 0.917741 0.037637 0.001537 0.117071 0.001067 0.880325 0.872739 0.016010 0.001067 0.110184 0.785830 0.073265 0.124424 0.016481 0.945286 0.001067 0.037166 0.016481 0.037637 0.857557 0.016010 0.088796 0.815601 0.109480 0.073381 0.001537 MOTIF 4-GGTTGAAR STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001 0.002355 0.001634 0.993656 0.002355 0.002355 0.001634 0.993656 0.002355 0.002355 0.001634 0.001634 0.994377 0.002355 0.001634 0.056936 0.939075 0.002355 0.001634 0.963858 0.032153 0.883773 0.001634 0.056936 0.057657 0.909278 0.056936 0.001634 0.032153 0.603485 0.001634 0.392525 0.002355 MOTIF 5-AGAGCGCG STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 9.5e-001 0.994281 0.001662 0.001662 0.002395 0.002395 0.001662 0.993547 0.002395 0.994281 0.001662 0.001662 0.002395 0.002395 0.001662 0.993547 0.002395 0.228469 0.598192 0.170943 0.002395 0.002395 0.057908 0.937302 0.002395 0.204480 0.735217 0.001662 0.058641 0.002395 0.001662 0.824266 0.171677 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15601.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG15601/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 1.55 seconds ********************************************************************************