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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-CTAGTTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 155 P= 1.5e-003
 0.000443 0.976215 0.019989 0.003353
 0.013109 0.130855 0.002402 0.853634
 0.666752 0.002402 0.312234 0.018611
 0.000443 0.000336 0.977139 0.022082
 0.011245 0.000336 0.011138 0.977280
 0.011245 0.000336 0.000336 0.988082
 0.022082 0.977139 0.000336 0.000443
 0.051862 0.749164 0.133413 0.065561

MOTIF 2-GCCKTAWC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.001355 0.001029 0.930166 0.067450
 0.067450 0.930166 0.001029 0.001355
 0.001355 0.996261 0.001029 0.001355
 0.001355 0.034076 0.632420 0.332149
 0.001355 0.001029 0.001029 0.996587
 0.662730 0.301839 0.001029 0.034402
 0.586018 0.034076 0.080804 0.299101
 0.001355 0.510741 0.255004 0.232900

MOTIF 3-AAATGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 7.0e-001
 0.996034 0.001196 0.001196 0.001575
 0.957627 0.039602 0.001196 0.001575
 0.996034 0.001196 0.001196 0.001575
 0.040043 0.001196 0.078132 0.880629
 0.001575 0.001196 0.773190 0.224039
 0.001575 0.995655 0.001196 0.001575
 0.764726 0.155567 0.078132 0.001575
 0.880629 0.001196 0.078132 0.040043

MOTIF 4-WATCGATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.440482 0.001697 0.001697 0.556124
 0.994372 0.001697 0.001697 0.002234
 0.002234 0.001697 0.001697 0.994372
 0.002234 0.993835 0.001697 0.002234
 0.166245 0.001697 0.829824 0.002234
 0.994372 0.001697 0.001697 0.002234
 0.002234 0.001697 0.001697 0.994372
 0.994372 0.001697 0.001697 0.002234

MOTIF 5-CGATAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.0e+000
 0.032281 0.840842 0.000965 0.125911
 0.032281 0.000965 0.965482 0.001271
 0.903769 0.031975 0.000965 0.063291
 0.001271 0.031975 0.000965 0.965788
 0.983961 0.013802 0.000965 0.001271
 0.996798 0.000965 0.000965 0.001271
 0.157324 0.134663 0.697529 0.010484
 0.748812 0.157018 0.076190 0.017980

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15514.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG15514/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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