********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-GATAAGGM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 3.7e-002
 0.000694 0.036813 0.961798 0.000694
 0.961941 0.000609 0.036755 0.000694
 0.000694 0.000609 0.000609 0.998087
 0.925738 0.000609 0.018682 0.054971
 0.961883 0.000609 0.036813 0.000694
 0.036898 0.073075 0.761943 0.128084
 0.172870 0.130483 0.677879 0.018767
 0.601494 0.364321 0.000609 0.033575

MOTIF 2-AGATACAM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 3.0e-001
 0.994578 0.001727 0.001727 0.001968
 0.001968 0.001727 0.994337 0.001968
 0.891972 0.001727 0.001727 0.104574
 0.001968 0.001727 0.052947 0.943358
 0.994578 0.001727 0.001727 0.001968
 0.001968 0.994337 0.001727 0.001968
 0.819631 0.074151 0.001727 0.104491
 0.402304 0.331995 0.139481 0.126220

MOTIF 3-GCAGGTAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 5.0e-001
 0.000951 0.000834 0.906090 0.092125
 0.000951 0.955652 0.000834 0.042563
 0.997381 0.000834 0.000834 0.000951
 0.000951 0.000834 0.997265 0.000951
 0.163883 0.125340 0.709826 0.000951
 0.000951 0.000834 0.050396 0.947820
 0.922919 0.075296 0.000834 0.000951
 0.490104 0.100278 0.408668 0.000951

MOTIF 4-ATTTATGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 5.0e-001
 0.948642 0.000821 0.000821 0.049716
 0.000936 0.123123 0.025172 0.850769
 0.042893 0.025172 0.098383 0.833551
 0.000936 0.188200 0.073953 0.736911
 0.875748 0.000821 0.059893 0.063538
 0.000936 0.000821 0.098383 0.899861
 0.000936 0.045125 0.953004 0.000936
 0.192080 0.132512 0.000821 0.674587

MOTIF 5-CCACTKAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.001221 0.996488 0.001071 0.001221
 0.001221 0.863223 0.134335 0.001221
 0.722930 0.001071 0.083945 0.192053
 0.109789 0.738963 0.001071 0.150177
 0.001221 0.191903 0.001071 0.805805
 0.001221 0.096487 0.550819 0.351473
 0.805445 0.001071 0.001071 0.192413
 0.001221 0.996488 0.001071 0.001221

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15479.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG15479/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.95 seconds
********************************************************************************