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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.34 C 0.16 G 0.16 T 0.34 

MOTIF 1-AAATGGGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.961504 0.000813 0.035960 0.001723
 0.926244 0.000813 0.000813 0.072130
 0.852578 0.059929 0.071221 0.016272
 0.016272 0.000813 0.035960 0.946955
 0.107505 0.035960 0.840263 0.016272
 0.036870 0.035960 0.712505 0.214665
 0.024515 0.000813 0.944832 0.029840
 0.016272 0.000813 0.015363 0.967552

MOTIF 2-AACGAAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 8.6e-001
 0.939152 0.040580 0.019482 0.000786
 0.927610 0.055191 0.000371 0.016829
 0.114179 0.884664 0.000371 0.000786
 0.000786 0.048550 0.742956 0.207708
 0.652769 0.061780 0.093418 0.192032
 0.908152 0.090691 0.000371 0.000786
 0.897844 0.100999 0.000371 0.000786
 0.109392 0.602601 0.097041 0.190966

MOTIF 3-ACTGTACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.938277 0.057658 0.001303 0.002762
 0.002762 0.993173 0.001303 0.002762
 0.059117 0.001303 0.001303 0.938277
 0.059117 0.170913 0.767208 0.002762
 0.033127 0.001303 0.057658 0.907912
 0.938277 0.001303 0.001303 0.059117
 0.002762 0.993173 0.001303 0.002762
 0.059117 0.114195 0.001303 0.825385

MOTIF 4-AGAAAAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.874286 0.041468 0.082259 0.001986
 0.001986 0.000937 0.973252 0.023825
 0.831811 0.122921 0.041468 0.003801
 0.898170 0.017716 0.000937 0.083178
 0.955609 0.000937 0.000937 0.042517
 0.938830 0.017716 0.041468 0.001986
 0.089280 0.041468 0.855225 0.014027
 0.018765 0.685160 0.163845 0.132231

MOTIF 5-ACTGAAGM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.916981 0.001753 0.001753 0.079513
 0.003715 0.990818 0.001753 0.003715
 0.003715 0.077551 0.001753 0.916981
 0.079513 0.077551 0.839222 0.003715
 0.916981 0.001753 0.001753 0.079513
 0.992779 0.001753 0.001753 0.003715
 0.079513 0.001753 0.915020 0.003715
 0.462193 0.532339 0.001753 0.003715

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15269.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG15269/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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