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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-AGRTGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 92 P= 4.8e-003
 0.948355 0.000400 0.050739 0.000506
 0.000506 0.000400 0.998589 0.000506
 0.560282 0.000400 0.438813 0.000506
 0.000506 0.000400 0.163219 0.835876
 0.000506 0.000400 0.998589 0.000506
 0.000506 0.000400 0.908134 0.090961
 0.000506 0.973490 0.025499 0.000506
 0.000506 0.000400 0.935618 0.063476

MOTIF 2-TAAACAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 91 P= 3.7e-002
 0.166435 0.103797 0.006562 0.723206
 0.997579 0.000741 0.000741 0.000938
 0.891157 0.000741 0.107163 0.000938
 0.718111 0.000741 0.280209 0.000938
 0.000938 0.949791 0.013286 0.035984
 0.908239 0.010380 0.074171 0.007211
 0.883996 0.044400 0.000741 0.070862
 0.859209 0.000741 0.129082 0.010967

MOTIF 3-CYACCGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.001238 0.904290 0.093234 0.001238
 0.031957 0.377344 0.044414 0.546285
 0.745185 0.093185 0.098954 0.062676
 0.031957 0.965827 0.000978 0.001238
 0.001238 0.996546 0.000978 0.001238
 0.052906 0.123904 0.791234 0.031957
 0.001238 0.860904 0.000978 0.136880
 0.001238 0.996546 0.000978 0.001238

MOTIF 4-TAAATACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.001392 0.075481 0.035635 0.887492
 0.927227 0.001100 0.001100 0.070573
 0.698109 0.230218 0.070281 0.001392
 0.940972 0.035635 0.015396 0.007997
 0.001392 0.001100 0.070281 0.927227
 0.873972 0.070393 0.019708 0.035927
 0.046021 0.833252 0.015396 0.105332
 0.908619 0.070281 0.019708 0.001392

MOTIF 5-AGCAGCTR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001
 0.996576 0.001048 0.001048 0.001327
 0.001327 0.001048 0.797993 0.199632
 0.001327 0.649394 0.067008 0.282271
 0.996576 0.001048 0.001048 0.001327
 0.001327 0.080745 0.718935 0.198994
 0.067233 0.930391 0.001048 0.001327
 0.001327 0.001048 0.001048 0.996576
 0.445192 0.001048 0.552433 0.001327

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14965.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG14965/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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