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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.312 C 0.188 G 0.188 T 0.312 

MOTIF 1-GGGTTGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 146 P= 1.5e-006
 0.000371 0.000223 0.999034 0.000371
 0.280106 0.000223 0.622401 0.097270
 0.000371 0.000223 0.999034 0.000371
 0.000371 0.058115 0.000223 0.941291
 0.016878 0.000223 0.000223 0.982676
 0.025171 0.000223 0.974235 0.000371
 0.016864 0.690413 0.000223 0.292499
 0.000371 0.999034 0.000223 0.000371

MOTIF 2-AAATGAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 5.0e-001
 0.745699 0.010427 0.193961 0.049913
 0.921475 0.001292 0.001292 0.075941
 0.925260 0.001292 0.071295 0.002153
 0.002153 0.001292 0.049052 0.947503
 0.002153 0.001292 0.994402 0.002153
 0.877500 0.001292 0.049052 0.072156
 0.755849 0.001292 0.096965 0.145894
 0.002153 0.054845 0.075080 0.867922

MOTIF 3-TAMWTWAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 5.0e-001
 0.001194 0.000716 0.000716 0.997373
 0.997373 0.000716 0.000716 0.001194
 0.586275 0.411814 0.000716 0.001194
 0.348302 0.159689 0.164796 0.327214
 0.001194 0.000716 0.000716 0.997373
 0.499586 0.027198 0.190443 0.282774
 0.690001 0.281565 0.000716 0.027718
 0.001194 0.000716 0.996896 0.001194

MOTIF 4-ACAGCTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.922226 0.001002 0.038052 0.038720
 0.001670 0.995657 0.001002 0.001670
 0.959276 0.038052 0.001002 0.001670
 0.063986 0.038052 0.896292 0.001670
 0.075769 0.810290 0.038052 0.075889
 0.001670 0.001002 0.001002 0.996325
 0.075889 0.001002 0.921439 0.001670
 0.772525 0.001002 0.001002 0.225471

MOTIF 5-AATTAGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.833578 0.160712 0.002141 0.003569
 0.959380 0.034910 0.002141 0.003569
 0.003569 0.002141 0.002141 0.992149
 0.003569 0.002141 0.002141 0.992149
 0.992149 0.002141 0.002141 0.003569
 0.003569 0.002141 0.990721 0.003569
 0.992149 0.002141 0.002141 0.003569
 0.754421 0.081299 0.002141 0.162139

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14711.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG14711/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.68 seconds
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