********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.314 C 0.186 G 0.186 T 0.314 

MOTIF 1-GGTCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 91 P= 9.6e-004
 0.000616 0.000364 0.998403 0.000616
 0.000616 0.013962 0.948339 0.037083
 0.065299 0.178842 0.068703 0.687157
 0.224632 0.642476 0.095809 0.037083
 0.971416 0.013962 0.014006 0.000616
 0.014214 0.984806 0.000364 0.000616
 0.975785 0.000364 0.000364 0.023486
 0.000616 0.971208 0.013962 0.014214

MOTIF 2-TATCGATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 1.2e-001
 0.122704 0.034104 0.000886 0.842305
 0.989887 0.007729 0.000886 0.001499
 0.054615 0.017415 0.000886 0.927084
 0.018028 0.979588 0.000886 0.001499
 0.001499 0.000886 0.979588 0.018028
 0.927084 0.000886 0.017415 0.054615
 0.001499 0.000886 0.007729 0.989887
 0.842305 0.000886 0.034104 0.122704

MOTIF 3-CGTTGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.7e-001
 0.023916 0.924231 0.046448 0.005405
 0.023880 0.069218 0.905866 0.001036
 0.051093 0.069366 0.004982 0.874559
 0.069642 0.046301 0.023457 0.860601
 0.088482 0.032913 0.809037 0.069568
 0.046724 0.855772 0.023493 0.074011
 0.014862 0.814051 0.114907 0.056181
 0.869693 0.046301 0.010069 0.073938

MOTIF 4-GTGTACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 5.0e-001
 0.001686 0.000997 0.964354 0.032963
 0.116936 0.000997 0.056844 0.825223
 0.020282 0.000997 0.945759 0.032963
 0.057533 0.000997 0.056784 0.884686
 0.884686 0.056784 0.000997 0.057533
 0.032963 0.945759 0.000997 0.020282
 0.825223 0.056844 0.000997 0.116936
 0.032963 0.964354 0.000997 0.001686

MOTIF 5-AGTGCTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 8.8e-001
 0.993932 0.001644 0.001644 0.002780
 0.002780 0.001644 0.992796 0.002780
 0.002780 0.001644 0.186235 0.809341
 0.002780 0.001644 0.992796 0.002780
 0.064113 0.931463 0.001644 0.002780
 0.002780 0.001644 0.001644 0.993932
 0.125643 0.001644 0.869933 0.002780
 0.002780 0.992796 0.001644 0.002780

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14710.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG14710/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.62 seconds
********************************************************************************