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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-GKCCCGWA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.5e-002
 0.001299 0.001103 0.996300 0.001299
 0.201462 0.001103 0.482004 0.315432
 0.001299 0.996300 0.001103 0.001299
 0.067984 0.896326 0.034392 0.001299
 0.001299 0.849256 0.001103 0.148342
 0.001299 0.001103 0.996300 0.001299
 0.496088 0.001103 0.134473 0.368336
 0.695820 0.301779 0.001103 0.001299

MOTIF 2-CCCGATTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.024582 0.929964 0.020873 0.024582
 0.024582 0.929964 0.020873 0.024582
 0.024582 0.929964 0.020873 0.024582
 0.024582 0.020873 0.929964 0.024582
 0.933673 0.020873 0.020873 0.024582
 0.024582 0.020873 0.020873 0.933673
 0.024582 0.020873 0.020873 0.933673
 0.024582 0.929964 0.020873 0.024582

MOTIF 3-AAATCGKA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 6.7e-001
 0.903975 0.002032 0.040431 0.053562
 0.958057 0.007872 0.027676 0.006396
 0.892453 0.035796 0.053458 0.018293
 0.056357 0.003951 0.010070 0.929623
 0.000687 0.923910 0.071349 0.004054
 0.009490 0.032822 0.920116 0.037573
 0.062523 0.007872 0.616192 0.313413
 0.835124 0.001371 0.074217 0.089288

MOTIF 4-CGAGAACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 8.8e-001
 0.046128 0.772658 0.135087 0.046128
 0.090666 0.090405 0.772802 0.046128
 0.995327 0.001471 0.001471 0.001732
 0.001732 0.025391 0.882211 0.090666
 0.995327 0.001471 0.001471 0.001732
 0.933948 0.009962 0.045866 0.010223
 0.001732 0.976687 0.019849 0.001732
 0.090666 0.817197 0.001471 0.090666

MOTIF 5-ACACACAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.911947 0.001515 0.084753 0.001785
 0.001785 0.883932 0.112498 0.001785
 0.857785 0.047266 0.093164 0.001785
 0.001785 0.911678 0.001515 0.085022
 0.949360 0.001515 0.001515 0.047609
 0.001785 0.994915 0.001515 0.001785
 0.949434 0.001515 0.001515 0.047535
 0.047535 0.001515 0.139210 0.811740

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13894.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13894/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.87 seconds
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