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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.282 C 0.218 G 0.218 T 0.282 

MOTIF 1-TRCGCAGY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 123 P= 4.3e-003
 0.000489 0.000379 0.090706 0.908427
 0.370717 0.036497 0.592297 0.000489
 0.000489 0.926917 0.072106 0.000489
 0.000489 0.000379 0.998644 0.000489
 0.000489 0.762866 0.012405 0.224240
 0.823999 0.129181 0.000379 0.046442
 0.000489 0.000379 0.998644 0.000489
 0.000489 0.503172 0.000379 0.495960

MOTIF 2-GGTCACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.002489 0.001927 0.993095 0.002489
 0.002489 0.001927 0.993095 0.002489
 0.002489 0.001927 0.001927 0.993657
 0.186741 0.808843 0.001927 0.002489
 0.932437 0.063147 0.001927 0.002489
 0.002489 0.993095 0.001927 0.002489
 0.932437 0.001927 0.063147 0.002489
 0.002489 0.993095 0.001927 0.002489

MOTIF 3-AGGRRGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 7.9e-001
 0.998171 0.000556 0.000556 0.000718
 0.047674 0.000556 0.951052 0.000718
 0.000718 0.206433 0.792132 0.000718
 0.363721 0.000556 0.564397 0.071326
 0.552675 0.124121 0.287182 0.036022
 0.000718 0.000556 0.716187 0.282540
 0.796159 0.028913 0.174210 0.000718
 0.000718 0.149137 0.626748 0.223397

MOTIF 4-ACAAATTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.993389 0.002008 0.002008 0.002594
 0.002594 0.992804 0.002008 0.002594
 0.839171 0.129816 0.002008 0.029005
 0.993389 0.002008 0.002008 0.002594
 0.673045 0.258449 0.065912 0.002594
 0.002594 0.002008 0.002008 0.993389
 0.002594 0.002008 0.002008 0.993389
 0.002594 0.002008 0.992804 0.002594

MOTIF 5-CCTCGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002512 0.993030 0.001945 0.002512
 0.002512 0.993030 0.001945 0.002512
 0.002512 0.001945 0.001945 0.993597
 0.064305 0.745660 0.125730 0.064305
 0.126297 0.063738 0.807453 0.002512
 0.931804 0.063738 0.001945 0.002512
 0.870012 0.001945 0.063738 0.064305
 0.931804 0.001945 0.001945 0.064305

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13624.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13624/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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