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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.37 C 0.13 G 0.13 T 0.37 

MOTIF 1-AATTGGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 3.3e-001
 0.927830 0.000706 0.000706 0.070758
 0.971381 0.000706 0.025894 0.002019
 0.115730 0.000706 0.000706 0.882859
 0.115730 0.092031 0.000706 0.791534
 0.186423 0.000706 0.810852 0.002019
 0.002019 0.000706 0.995255 0.002019
 0.915196 0.000706 0.000706 0.083393
 0.090577 0.000706 0.092031 0.816686

MOTIF 2-AATTTCAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.8e-001
 0.994522 0.001127 0.001127 0.003224
 0.994522 0.001127 0.001127 0.003224
 0.003224 0.001127 0.001127 0.994522
 0.003224 0.001127 0.182667 0.812982
 0.215076 0.001127 0.001127 0.782670
 0.003224 0.992425 0.001127 0.003224
 0.994522 0.001127 0.001127 0.003224
 0.003224 0.001127 0.001127 0.994522

MOTIF 3-AAAATGGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.992854 0.001470 0.001470 0.004206
 0.835230 0.001470 0.159094 0.004206
 0.960281 0.001470 0.034043 0.004206
 0.992854 0.001470 0.001470 0.004206
 0.004206 0.001470 0.001470 0.992854
 0.004206 0.001470 0.990118 0.004206
 0.004206 0.001470 0.990118 0.004206
 0.004206 0.001470 0.001470 0.992854

MOTIF 4-TAACTCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.056405 0.054543 0.001000 0.888052
 0.941595 0.001000 0.001000 0.056405
 0.887880 0.001000 0.001000 0.110119
 0.002862 0.939733 0.054543 0.002862
 0.025027 0.054543 0.001000 0.919430
 0.164008 0.688532 0.054543 0.092918
 0.972973 0.001000 0.001000 0.025027
 0.110292 0.001000 0.778588 0.110119

MOTIF 5-AAATCATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.992987 0.001443 0.001443 0.004128
 0.915766 0.001443 0.078663 0.004128
 0.838297 0.001443 0.156132 0.004128
 0.004128 0.001443 0.001443 0.992987
 0.004128 0.990302 0.001443 0.004128
 0.630321 0.131324 0.234228 0.004128
 0.004128 0.001443 0.001443 0.992987
 0.992987 0.001443 0.001443 0.004128

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13424.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13424/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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