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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-AAAAGAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 5.0e-001
 0.997716 0.000615 0.000615 0.001054
 0.877559 0.000615 0.120772 0.001054
 0.782425 0.043990 0.058519 0.115066
 0.743824 0.034520 0.026553 0.195103
 0.001054 0.000615 0.818308 0.180024
 0.761810 0.000615 0.236521 0.001054
 0.990006 0.000615 0.008326 0.001054
 0.776799 0.063603 0.158545 0.001054

MOTIF 2-AGTCTACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.741351 0.128359 0.128359 0.001932
 0.044342 0.001128 0.952599 0.001932
 0.044342 0.001128 0.001128 0.953403
 0.129299 0.782685 0.001128 0.086889
 0.086752 0.001128 0.001128 0.910992
 0.868582 0.001128 0.085948 0.044342
 0.001932 0.570291 0.256068 0.171709
 0.044342 0.061163 0.892564 0.001932

MOTIF 3-GGCAAATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.002889 0.001686 0.992537 0.002889
 0.002889 0.001686 0.992537 0.002889
 0.002889 0.801354 0.001686 0.194071
 0.930319 0.001686 0.001686 0.066309
 0.802865 0.001686 0.192560 0.002889
 0.866899 0.065106 0.001686 0.066309
 0.002889 0.001686 0.001686 0.993739
 0.993739 0.001686 0.001686 0.002889

MOTIF 4-GYAAACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 7.0e-001
 0.001044 0.000609 0.997304 0.001044
 0.001044 0.581628 0.000609 0.416720
 0.951839 0.000609 0.000609 0.046942
 0.813810 0.092555 0.092592 0.001044
 0.924109 0.000609 0.000609 0.074673
 0.001044 0.933106 0.000609 0.065241
 0.974826 0.000609 0.023522 0.001044
 0.934548 0.036009 0.028400 0.001044

MOTIF 5-GGCCATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.004180 0.002440 0.989200 0.004180
 0.004180 0.002440 0.805353 0.188027
 0.095956 0.805648 0.002440 0.095956
 0.004180 0.989200 0.002440 0.004180
 0.899164 0.094216 0.002440 0.004180
 0.004180 0.002440 0.002440 0.990940
 0.990940 0.002440 0.002440 0.004180
 0.990940 0.002440 0.002440 0.004180

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13296.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13296/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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