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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.213 C 0.287 G 0.287 T 0.213 

MOTIF 1-AAWTAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.756929 0.001652 0.001652 0.239766
 0.796036 0.081375 0.001652 0.120936
 0.659500 0.001652 0.001652 0.337195
 0.001223 0.001652 0.001652 0.995472
 0.955611 0.041514 0.001652 0.001223
 0.955611 0.001652 0.001652 0.041085
 0.995472 0.001652 0.001652 0.001223
 0.193755 0.258484 0.018154 0.529608

MOTIF 2-AGCAGTWG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.915613 0.078921 0.003141 0.002325
 0.002325 0.003141 0.992208 0.002325
 0.002325 0.613311 0.154700 0.229664
 0.991393 0.003141 0.003141 0.002325
 0.002325 0.003141 0.992208 0.002325
 0.002325 0.003141 0.003141 0.991393
 0.381467 0.003141 0.003141 0.612251
 0.002325 0.003141 0.992208 0.002325

MOTIF 3-CAACAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 5.0e-001
 0.000977 0.996726 0.001320 0.000977
 0.704404 0.065218 0.038221 0.192157
 0.821785 0.021788 0.155450 0.000977
 0.000977 0.996726 0.001320 0.000977
 0.932639 0.065064 0.001320 0.000977
 0.913081 0.039593 0.001320 0.046007
 0.107469 0.758884 0.096961 0.036686
 0.895782 0.001320 0.069972 0.032926

MOTIF 4-GAGCGGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.190124 0.001946 0.759547 0.048384
 0.805985 0.001946 0.190629 0.001441
 0.001441 0.001946 0.948230 0.048384
 0.048459 0.948154 0.001946 0.001441
 0.001441 0.048889 0.948230 0.001441
 0.001441 0.001946 0.995173 0.001441
 0.001441 0.001946 0.001946 0.994668
 0.994668 0.001946 0.001946 0.001441

MOTIF 5-CCGCTGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 7.7e-001
 0.000639 0.807950 0.106882 0.084528
 0.000639 0.961954 0.036767 0.000639
 0.025173 0.042684 0.891328 0.040816
 0.006253 0.988258 0.004849 0.000639
 0.000639 0.033057 0.000864 0.965440
 0.006830 0.041769 0.897335 0.054066
 0.006830 0.749654 0.179960 0.063556
 0.000639 0.958368 0.021600 0.019393

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13204.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13204/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	2.02 seconds
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