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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.322 C 0.178 G 0.178 T 0.322 

MOTIF 1-AAGTAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.912875 0.070285 0.000890 0.015949
 0.961969 0.000890 0.000890 0.036251
 0.001609 0.112212 0.779972 0.106208
 0.170688 0.105151 0.000890 0.723271
 0.903703 0.059156 0.000890 0.036251
 0.956470 0.041031 0.000890 0.001609
 0.975645 0.000890 0.015231 0.008235
 0.001609 0.972081 0.006036 0.020274

MOTIF 2-RYATTTTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 5.0e-001
 0.617870 0.000588 0.380480 0.001063
 0.001063 0.417419 0.000588 0.580930
 0.997761 0.000588 0.000588 0.001063
 0.001063 0.145322 0.000588 0.853028
 0.001063 0.000588 0.000588 0.997761
 0.001063 0.000588 0.000588 0.997761
 0.192783 0.187393 0.155302 0.464522
 0.001063 0.997287 0.000588 0.001063

MOTIF 3-GGTAAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 6.7e-001
 0.125239 0.000603 0.727945 0.146213
 0.001089 0.000603 0.997219 0.001089
 0.071677 0.095854 0.000603 0.831866
 0.903664 0.071191 0.000603 0.024543
 0.997706 0.000603 0.000603 0.001089
 0.903815 0.024056 0.047586 0.024543
 0.057984 0.860946 0.024056 0.057014
 0.974252 0.000603 0.000603 0.024543

MOTIF 4-ATCGATAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.0e-001
 0.955232 0.001048 0.001048 0.042672
 0.042672 0.008847 0.041827 0.906654
 0.042672 0.814774 0.017929 0.124624
 0.207108 0.041827 0.708393 0.042672
 0.979130 0.017929 0.001048 0.001894
 0.001894 0.001048 0.008847 0.988211
 0.996011 0.001048 0.001048 0.001894
 0.001894 0.001048 0.995165 0.001894

MOTIF 5-AAATATTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 7.5e-001
 0.830703 0.090996 0.037417 0.040883
 0.882312 0.012385 0.050795 0.054508
 0.872174 0.050795 0.006768 0.070263
 0.001804 0.049037 0.002781 0.946377
 0.946377 0.002781 0.049037 0.001804
 0.070263 0.006768 0.050795 0.872174
 0.054508 0.050795 0.012385 0.882312
 0.040883 0.037417 0.090996 0.830703

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13123.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG13123/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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