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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.323 C 0.177 G 0.177 T 0.323 

MOTIF 1-AATATSTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.995827 0.001089 0.001089 0.001995
 0.953074 0.043842 0.001089 0.001995
 0.160802 0.001089 0.001089 0.837020
 0.995827 0.001089 0.001089 0.001995
 0.251616 0.001089 0.001089 0.746206
 0.001995 0.337890 0.658121 0.001995
 0.001995 0.001089 0.001089 0.995827
 0.995827 0.001089 0.001089 0.001995

MOTIF 2-CAACACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.001279 0.996743 0.000699 0.001279
 0.969906 0.000699 0.000699 0.028697
 0.560778 0.055622 0.205845 0.177755
 0.001279 0.996743 0.000699 0.001279
 0.757779 0.177174 0.000699 0.064348
 0.001279 0.831617 0.000699 0.166405
 0.001279 0.028116 0.000699 0.969906
 0.043639 0.028116 0.871953 0.056291

MOTIF 3-CAGTGGAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.002561 0.773395 0.166595 0.057449
 0.994642 0.001398 0.001398 0.002561
 0.002561 0.001398 0.993480 0.002561
 0.002561 0.001398 0.056287 0.939754
 0.002561 0.001398 0.993480 0.002561
 0.002561 0.166595 0.828283 0.002561
 0.884688 0.001398 0.111352 0.002561
 0.334565 0.001398 0.661476 0.002561

MOTIF 4-GAACTAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.002495 0.001362 0.993648 0.002495
 0.941309 0.001362 0.054834 0.002495
 0.919174 0.001362 0.054834 0.024630
 0.002495 0.993648 0.001362 0.002495
 0.002495 0.054834 0.054834 0.887838
 0.834194 0.108477 0.001362 0.055966
 0.811597 0.001362 0.054834 0.132207
 0.092431 0.001362 0.054834 0.851373

MOTIF 5-TATCGATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.207159 0.122253 0.054795 0.615793
 0.827043 0.052294 0.041977 0.078686
 0.060265 0.090638 0.011821 0.837276
 0.005697 0.970184 0.023070 0.001048
 0.001048 0.023070 0.970184 0.005697
 0.837276 0.011821 0.090638 0.060265
 0.078686 0.041977 0.052294 0.827043
 0.615793 0.054795 0.122253 0.207159

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12942.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12942/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n06.farnam.hpc.yale.internal
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FINALTIME:	2.33 seconds
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