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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.248 C 0.252 G 0.252 T 0.248 

MOTIF 1-CCATTCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 5.0e-001
 0.000587 0.945754 0.015412 0.038247
 0.000587 0.899437 0.000597 0.099379
 0.558021 0.064303 0.167683 0.209992
 0.000587 0.000597 0.113643 0.885173
 0.153091 0.000597 0.000597 0.845714
 0.049841 0.774114 0.175458 0.000587
 0.099922 0.608224 0.251608 0.040246
 0.000587 0.827974 0.170852 0.000587

MOTIF 2-AATTATGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.991401 0.002883 0.002883 0.002833
 0.832665 0.161619 0.002883 0.002833
 0.002833 0.035686 0.002883 0.958598
 0.002833 0.002883 0.002883 0.991401
 0.991401 0.002883 0.002883 0.002833
 0.241321 0.082124 0.002883 0.673673
 0.002833 0.002883 0.991451 0.002833
 0.002833 0.991451 0.002883 0.002833

MOTIF 3-ATWTTTAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 113 P= 6.2e-001
 0.833921 0.062004 0.103621 0.000454
 0.000454 0.173056 0.221871 0.604619
 0.453112 0.000462 0.013171 0.533254
 0.000454 0.000462 0.000462 0.998621
 0.000454 0.051338 0.301466 0.646742
 0.105107 0.000462 0.000462 0.893969
 0.998621 0.000462 0.000462 0.000454
 0.125621 0.079469 0.263822 0.531088

MOTIF 4-ATAAATCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.875990 0.041302 0.001450 0.081258
 0.001425 0.028018 0.001450 0.969107
 0.995675 0.001450 0.001450 0.001425
 0.835881 0.001450 0.041302 0.121367
 0.875990 0.081283 0.001450 0.041277
 0.073931 0.017948 0.001450 0.906672
 0.081258 0.836163 0.041302 0.041277
 0.795641 0.161632 0.041302 0.001425

MOTIF 5-TGACGTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002438 0.085191 0.002481 0.909890
 0.036534 0.036577 0.924452 0.002438
 0.992600 0.002481 0.002481 0.002438
 0.002438 0.924342 0.070782 0.002438
 0.002438 0.070782 0.924342 0.002438
 0.002438 0.002481 0.002481 0.992600
 0.002438 0.924452 0.036577 0.036534
 0.909890 0.002481 0.085191 0.002438

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12769.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12769/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.46 seconds
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