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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-CAAAGTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.5e-002
 0.019295 0.963974 0.008330 0.008401
 0.906591 0.000635 0.009929 0.082845
 0.975880 0.019223 0.000635 0.004262
 0.934504 0.019253 0.026948 0.019295
 0.019295 0.009929 0.962375 0.008401
 0.022850 0.000635 0.019223 0.957292
 0.094039 0.573624 0.104153 0.228183
 0.031971 0.858154 0.034454 0.075421

MOTIF 2-AAAGTCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.5e-002
 0.866289 0.049320 0.049242 0.035149
 0.900518 0.000827 0.025034 0.073621
 0.876310 0.049242 0.025034 0.049413
 0.025127 0.000827 0.924555 0.049491
 0.049491 0.004811 0.025034 0.920664
 0.073543 0.817389 0.098127 0.010941
 0.172589 0.049320 0.680262 0.097829
 0.827111 0.122650 0.049320 0.000920

MOTIF 3-ATKTAMAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 3.6e-001
 0.771869 0.020065 0.135797 0.072268
 0.039512 0.021918 0.141883 0.796686
 0.032704 0.000662 0.507614 0.459020
 0.000736 0.060787 0.054475 0.884002
 0.884002 0.054475 0.060787 0.000736
 0.459020 0.507614 0.000662 0.032704
 0.796686 0.141883 0.021918 0.039512
 0.072268 0.135797 0.020065 0.771869

MOTIF 4-ACAGCCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.805409 0.001386 0.001386 0.191818
 0.001542 0.734609 0.018193 0.245656
 0.955087 0.041985 0.001386 0.001542
 0.042141 0.273056 0.602064 0.082739
 0.042141 0.954931 0.001386 0.001542
 0.001542 0.927245 0.069671 0.001542
 0.792562 0.001386 0.041985 0.164067
 0.001542 0.995529 0.001386 0.001542

MOTIF 5-GAGAGCGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.023936 0.021518 0.930609 0.023936
 0.933027 0.021518 0.021518 0.023936
 0.023936 0.021518 0.930609 0.023936
 0.933027 0.021518 0.021518 0.023936
 0.023936 0.021518 0.930609 0.023936
 0.023936 0.930609 0.021518 0.023936
 0.023936 0.021518 0.930609 0.023936
 0.933027 0.021518 0.021518 0.023936

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12768.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12768/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	2.64 seconds
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