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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.379 C 0.121 G 0.121 T 0.379 

MOTIF 1-ACTACAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.3e-001
 0.747541 0.030153 0.000516 0.221790
 0.001621 0.996241 0.000516 0.001621
 0.269882 0.000516 0.148793 0.580809
 0.878706 0.059884 0.000516 0.060894
 0.001621 0.996241 0.000516 0.001621
 0.700314 0.119157 0.000516 0.180013
 0.710123 0.089520 0.000516 0.199840
 0.967709 0.000516 0.030153 0.001621

MOTIF 2-CAGCTTAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.039989 0.881446 0.076491 0.002074
 0.882737 0.000661 0.114528 0.002074
 0.078026 0.092308 0.561698 0.267968
 0.002074 0.957276 0.000661 0.039989
 0.017770 0.000661 0.000661 0.980909
 0.131881 0.038576 0.000661 0.828882
 0.882859 0.114406 0.000661 0.002074
 0.065845 0.000661 0.829734 0.103760

MOTIF 3-AAAACTTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.670776 0.093365 0.000805 0.235053
 0.671677 0.093365 0.093365 0.141592
 0.930528 0.000805 0.019933 0.048734
 0.995862 0.000805 0.000805 0.002528
 0.002528 0.994139 0.000805 0.002528
 0.002528 0.000805 0.000805 0.995862
 0.048734 0.000805 0.000805 0.949656
 0.002528 0.000805 0.994139 0.002528

MOTIF 4-AAGGAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 136 P= 9.6e-001
 0.943564 0.010982 0.010982 0.034473
 0.943564 0.010982 0.010982 0.034473
 0.034473 0.010982 0.920073 0.034473
 0.034473 0.010982 0.920073 0.034473
 0.943564 0.010982 0.010982 0.034473
 0.943564 0.010982 0.010982 0.034473
 0.943564 0.010982 0.010982 0.034473
 0.034473 0.010982 0.010982 0.943564

MOTIF 5-ATCTCACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.943564 0.010982 0.010982 0.034473
 0.034473 0.010982 0.010982 0.943564
 0.034473 0.920073 0.010982 0.034473
 0.034473 0.010982 0.010982 0.943564
 0.034473 0.920073 0.010982 0.034473
 0.943564 0.010982 0.010982 0.034473
 0.034473 0.920073 0.010982 0.034473
 0.943564 0.010982 0.010982 0.034473

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12391.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12391/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.42 seconds
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