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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-GGYAAAYA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 95 P= 5.3e-003
 0.163542 0.065013 0.770746 0.000699
 0.000699 0.000426 0.998175 0.000699
 0.000699 0.380127 0.000426 0.618748
 0.946355 0.052520 0.000426 0.000699
 0.904760 0.047270 0.016024 0.031946
 0.998449 0.000426 0.000426 0.000699
 0.000699 0.598850 0.000426 0.400025
 0.842142 0.000426 0.078567 0.078866

MOTIF 2-TAAACAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 2.1e-001
 0.001427 0.000868 0.000868 0.996836
 0.830852 0.103115 0.064607 0.001427
 0.970493 0.000868 0.014040 0.014598
 0.846861 0.003487 0.128964 0.020688
 0.001427 0.996278 0.000868 0.001427
 0.978939 0.005595 0.014040 0.001427
 0.928308 0.000868 0.000868 0.069955
 0.721702 0.008658 0.161249 0.108391

MOTIF 3-ATAAGAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.790562 0.154792 0.001391 0.053255
 0.002285 0.001391 0.052361 0.943963
 0.790562 0.052361 0.001391 0.155686
 0.943963 0.052361 0.001391 0.002285
 0.002285 0.001391 0.994038 0.002285
 0.790562 0.001391 0.052361 0.155686
 0.973832 0.001391 0.001391 0.023385
 0.002285 0.994038 0.001391 0.002285

MOTIF 4-GAAAATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.003287 0.002001 0.991424 0.003287
 0.772524 0.002001 0.148871 0.076604
 0.741700 0.002001 0.222661 0.033638
 0.992710 0.002001 0.002001 0.003287
 0.992710 0.002001 0.002001 0.003287
 0.003287 0.002001 0.002001 0.992710
 0.003287 0.002001 0.991424 0.003287
 0.992710 0.002001 0.002001 0.003287

MOTIF 5-ATATKKAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.954922 0.042121 0.001119 0.001838
 0.001838 0.001119 0.008962 0.988081
 0.995923 0.001119 0.001119 0.001838
 0.014019 0.042121 0.001119 0.942741
 0.001838 0.001119 0.396873 0.600169
 0.001838 0.001119 0.374958 0.622084
 0.995923 0.001119 0.001119 0.001838
 0.001838 0.995204 0.001119 0.001838

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1233.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG1233/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.99 seconds
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