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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-AATAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 1.9e-001
 0.909270 0.013186 0.006616 0.070929
 0.680485 0.098388 0.092222 0.128906
 0.001383 0.005684 0.066209 0.926725
 0.895427 0.006616 0.031173 0.066783
 0.867084 0.045316 0.000808 0.086793
 0.944467 0.031173 0.006616 0.017744
 0.001383 0.885430 0.030621 0.082566
 0.901298 0.061637 0.015991 0.021074

MOTIF 2-ATATTTAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.0e-001
 0.963648 0.014531 0.019778 0.002044
 0.002044 0.110092 0.001194 0.886670
 0.995568 0.001194 0.001194 0.002044
 0.046935 0.046085 0.019778 0.887202
 0.002044 0.002180 0.188996 0.806780
 0.110941 0.001194 0.076698 0.811166
 0.995568 0.001194 0.001194 0.002044
 0.002044 0.994718 0.001194 0.002044

MOTIF 3-CCATCTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.002921 0.992450 0.001707 0.002921
 0.002921 0.965890 0.001707 0.029482
 0.800973 0.130237 0.065869 0.002921
 0.067083 0.001707 0.001707 0.929503
 0.002921 0.992450 0.001707 0.002921
 0.067186 0.065869 0.001707 0.865238
 0.067083 0.928289 0.001707 0.002921
 0.196027 0.130237 0.001707 0.672029

MOTIF 4-CGCRTCGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.001507 0.963004 0.033982 0.001507
 0.001507 0.067083 0.929903 0.001507
 0.001507 0.664186 0.233015 0.101292
 0.664758 0.000881 0.332854 0.001507
 0.200541 0.000881 0.000881 0.797698
 0.001507 0.731029 0.100184 0.167279
 0.001507 0.000881 0.996105 0.001507
 0.067763 0.929849 0.000881 0.001507

MOTIF 5-CACATACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.002017 0.972632 0.023333 0.002017
 0.951316 0.045487 0.001179 0.002017
 0.002017 0.950406 0.045559 0.002017
 0.849393 0.089939 0.045487 0.015181
 0.002017 0.001179 0.096610 0.900194
 0.862556 0.001179 0.045487 0.090777
 0.002017 0.950478 0.045487 0.002017
 0.754880 0.045487 0.179273 0.020360

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12299.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12299/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.56 seconds
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