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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-GTAAACAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 83 P= 2.1e-001
 0.037645 0.081034 0.880497 0.000824
 0.019406 0.151074 0.023173 0.806346
 0.877829 0.113094 0.000523 0.008554
 0.959186 0.002060 0.037931 0.000824
 0.882396 0.037871 0.004095 0.075638
 0.019497 0.877934 0.008254 0.094315
 0.919803 0.004095 0.000523 0.075578
 0.881449 0.034498 0.037931 0.046123

MOTIF 2-TATKTACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.3e-001
 0.001384 0.000880 0.063683 0.934053
 0.996857 0.000880 0.000880 0.001384
 0.221272 0.000880 0.000880 0.776969
 0.001384 0.013868 0.329109 0.655639
 0.032760 0.000880 0.000880 0.965481
 0.996857 0.000880 0.000880 0.001384
 0.001384 0.964976 0.032256 0.001384
 0.600529 0.245251 0.108370 0.045850

MOTIF 3-CATTCGTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.001854 0.974095 0.022197 0.001854
 0.869543 0.001178 0.043215 0.086063
 0.043891 0.043215 0.001178 0.911715
 0.043891 0.001178 0.085388 0.869543
 0.086063 0.910905 0.001178 0.001854
 0.086335 0.018580 0.893230 0.001854
 0.072558 0.043215 0.085523 0.798703
 0.001854 0.085388 0.001178 0.911580

MOTIF 4-ATTTGCTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 8.8e-001
 0.948220 0.041937 0.008668 0.001176
 0.027836 0.081115 0.007930 0.883119
 0.001176 0.080985 0.027407 0.890431
 0.027836 0.027407 0.005847 0.938910
 0.065849 0.027407 0.905568 0.001176
 0.042365 0.880724 0.075735 0.001176
 0.058596 0.189189 0.027407 0.724808
 0.027836 0.027407 0.000747 0.944009

MOTIF 5-AATTGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 9.5e-001
 0.995173 0.001351 0.001351 0.002125
 0.801945 0.194579 0.001351 0.002125
 0.002125 0.001351 0.001351 0.995173
 0.002125 0.001351 0.089027 0.907497
 0.002125 0.001351 0.994398 0.002125
 0.995173 0.001351 0.001351 0.002125
 0.850135 0.001351 0.146389 0.002125
 0.656907 0.001351 0.194579 0.147163

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12236.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12236/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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