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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.311 C 0.189 G 0.189 T 0.311 

MOTIF 1-ACACGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 3.0e-001
 0.995741 0.001167 0.001167 0.001924
 0.087776 0.823418 0.001167 0.087638
 0.874036 0.001167 0.001167 0.123630
 0.087776 0.866206 0.001167 0.044850
 0.079897 0.001167 0.874154 0.044781
 0.087776 0.805676 0.044025 0.062523
 0.995741 0.001167 0.001167 0.001924
 0.001924 0.151690 0.758609 0.087776

MOTIF 2-CTTATCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.002132 0.994444 0.001293 0.002132
 0.049609 0.001293 0.001293 0.947805
 0.002132 0.001293 0.001293 0.995282
 0.900328 0.048770 0.048770 0.002132
 0.002132 0.020947 0.001293 0.975628
 0.002132 0.994444 0.001293 0.002132
 0.689073 0.020947 0.192742 0.097238
 0.002132 0.660416 0.192431 0.145022

MOTIF 3-ACATAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 8.3e-001
 0.732415 0.096316 0.160426 0.010843
 0.001424 0.996289 0.000864 0.001424
 0.894959 0.000864 0.000864 0.103314
 0.001424 0.000864 0.000864 0.996849
 0.838110 0.064380 0.064380 0.033131
 0.910582 0.017948 0.054193 0.017277
 0.932822 0.032571 0.013989 0.020618
 0.001424 0.064380 0.000864 0.933333

MOTIF 4-AWCATTAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.936935 0.001562 0.058927 0.002575
 0.580135 0.116475 0.001562 0.301827
 0.002575 0.993287 0.001562 0.002575
 0.764659 0.173839 0.058927 0.002575
 0.002575 0.001562 0.001562 0.994300
 0.002575 0.001562 0.001562 0.994300
 0.994300 0.001562 0.001562 0.002575
 0.002575 0.001562 0.001562 0.994300

MOTIF 5-TAAATGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.002796 0.001696 0.001696 0.993811
 0.993811 0.001696 0.001696 0.002796
 0.869059 0.126449 0.001696 0.002796
 0.993811 0.001696 0.001696 0.002796
 0.002796 0.189127 0.152767 0.655309
 0.002796 0.001696 0.992712 0.002796
 0.993811 0.001696 0.001696 0.002796
 0.842740 0.001696 0.001696 0.153867

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12219.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12219/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	3.31 seconds
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