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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-ACTCGCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 152 P= 1.6e-002
 0.854666 0.000410 0.000410 0.144513
 0.012528 0.938137 0.012497 0.036838
 0.000460 0.012478 0.000410 0.986652
 0.000460 0.974476 0.012536 0.012528
 0.000460 0.000410 0.986602 0.012528
 0.012547 0.802158 0.012478 0.172817
 0.000460 0.108787 0.000410 0.890343
 0.210662 0.000410 0.788468 0.000460

MOTIF 2-YTTGAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.002880 0.534880 0.002568 0.459672
 0.002880 0.002568 0.002568 0.991984
 0.002880 0.002568 0.002568 0.991984
 0.002880 0.002568 0.991673 0.002880
 0.991984 0.002568 0.002568 0.002880
 0.991984 0.002568 0.002568 0.002880
 0.916465 0.002568 0.078087 0.002880
 0.991984 0.002568 0.002568 0.002880

MOTIF 3-ATCGATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.953944 0.001414 0.043057 0.001585
 0.043229 0.042990 0.001414 0.912367
 0.001585 0.995416 0.001414 0.001585
 0.126717 0.001414 0.862332 0.009538
 0.717240 0.071343 0.126545 0.084872
 0.009538 0.084835 0.001414 0.904214
 0.121089 0.001414 0.073051 0.804446
 0.029303 0.001414 0.048033 0.921250

MOTIF 4-CAGCAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.002501 0.927165 0.002231 0.068103
 0.927436 0.067832 0.002231 0.002501
 0.002501 0.002231 0.992766 0.002501
 0.002501 0.927060 0.002231 0.068208
 0.861624 0.002231 0.002231 0.133915
 0.993037 0.002231 0.002231 0.002501
 0.002501 0.992766 0.002231 0.002501
 0.861624 0.133644 0.002231 0.002501

MOTIF 5-AAAAGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 8.3e-001
 0.958444 0.001277 0.001277 0.039001
 0.807687 0.001277 0.189603 0.001432
 0.882339 0.016830 0.076656 0.024175
 0.806889 0.152833 0.038846 0.001432
 0.001432 0.001277 0.932670 0.064620
 0.001432 0.001277 0.932670 0.064620
 0.807869 0.151792 0.038906 0.001432
 0.958444 0.001277 0.038846 0.001432

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12155.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12155/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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