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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-TATTTACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 2.0e-003
 0.092820 0.009926 0.046436 0.850817
 0.971466 0.000715 0.020787 0.007032
 0.000932 0.000715 0.023539 0.974815
 0.000932 0.069261 0.072811 0.856997
 0.012344 0.007495 0.009096 0.971065
 0.874339 0.039104 0.081260 0.005297
 0.038787 0.850350 0.046436 0.064426
 0.796043 0.092791 0.092603 0.018563

MOTIF 2-CCATAAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.5e-002
 0.089818 0.815465 0.058921 0.035796
 0.001404 0.938270 0.001077 0.059249
 0.996442 0.001077 0.001077 0.001404
 0.001404 0.001077 0.069970 0.927549
 0.927549 0.001077 0.069970 0.001404
 0.875961 0.018272 0.035468 0.070298
 0.982206 0.001077 0.015314 0.001404
 0.120929 0.622595 0.046709 0.209767

MOTIF 3-GCAAACAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 97 P= 2.5e-001
 0.054186 0.076176 0.860441 0.009197
 0.031850 0.760241 0.139112 0.068797
 0.922082 0.005594 0.046686 0.025638
 0.837797 0.010098 0.139029 0.013076
 0.832336 0.048352 0.038142 0.081170
 0.025679 0.833093 0.014110 0.127119
 0.859113 0.017782 0.097467 0.025638
 0.090191 0.035336 0.808841 0.065632

MOTIF 4-GCGATACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002101 0.053069 0.921427 0.023403
 0.105183 0.891105 0.001611 0.002101
 0.053642 0.104693 0.839564 0.002101
 0.891760 0.001611 0.053069 0.053559
 0.023403 0.022913 0.053069 0.900615
 0.891678 0.001611 0.053152 0.053559
 0.209691 0.786597 0.001611 0.002101
 0.053559 0.001611 0.942729 0.002101

MOTIF 5-CACTTTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001749 0.995162 0.001341 0.001749
 0.762864 0.234046 0.001341 0.001749
 0.001749 0.995162 0.001341 0.001749
 0.001749 0.216385 0.001341 0.780525
 0.001749 0.001341 0.001341 0.995570
 0.001749 0.331458 0.001341 0.665453
 0.191625 0.044170 0.762456 0.001749
 0.001749 0.995162 0.001341 0.001749

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12071.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG12071/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	1.93 seconds
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