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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.348 C 0.152 G 0.152 T 0.348 

MOTIF 1-GGTRYACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.251072 0.001360 0.558488 0.189080
 0.003105 0.063252 0.930539 0.003105
 0.003105 0.032306 0.094198 0.870391
 0.405802 0.001360 0.496895 0.095943
 0.095943 0.496895 0.001360 0.405802
 0.870391 0.094198 0.032306 0.003105
 0.003105 0.930539 0.063252 0.003105
 0.189080 0.558488 0.001360 0.251072

MOTIF 2-AAAATATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 96 P= 6.2e-001
 0.945478 0.005773 0.021071 0.027677
 0.866644 0.007575 0.030226 0.095555
 0.767572 0.021660 0.134258 0.076511
 0.851106 0.022301 0.042407 0.084186
 0.002082 0.013137 0.001823 0.982958
 0.960834 0.008509 0.028576 0.002082
 0.018771 0.018696 0.068795 0.893738
 0.208785 0.020357 0.000912 0.769946

MOTIF 3-ATGTTTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.0e-001
 0.940700 0.013845 0.013845 0.031609
 0.031609 0.013845 0.013845 0.940700
 0.031609 0.013845 0.922936 0.031609
 0.031609 0.013845 0.013845 0.940700
 0.031609 0.013845 0.013845 0.940700
 0.031609 0.013845 0.013845 0.940700
 0.940700 0.013845 0.013845 0.031609
 0.940700 0.013845 0.013845 0.031609

MOTIF 4-WCATATGW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.663570 0.001444 0.001444 0.333543
 0.003296 0.991964 0.001444 0.003296
 0.862188 0.001444 0.133072 0.003296
 0.003296 0.001444 0.001444 0.993816
 0.993816 0.001444 0.001444 0.003296
 0.003296 0.133072 0.001444 0.862188
 0.003296 0.001444 0.991964 0.003296
 0.333543 0.001444 0.001444 0.663570

MOTIF 5-ATCGCTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.992844 0.001671 0.001671 0.003814
 0.155898 0.001671 0.001671 0.840761
 0.003814 0.990700 0.001671 0.003814
 0.003814 0.077712 0.838617 0.079856
 0.079856 0.914659 0.001671 0.003814
 0.003814 0.077712 0.229795 0.688678
 0.992844 0.001671 0.001671 0.003814
 0.003814 0.686289 0.153999 0.155898

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11762.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG11762/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.28 seconds
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