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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-CGCWYACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 2.1e-001
 0.000942 0.997520 0.000596 0.000942
 0.000942 0.043268 0.856574 0.099216
 0.000942 0.847944 0.000596 0.150518
 0.442856 0.000596 0.064759 0.491790
 0.000942 0.570870 0.043234 0.384954
 0.867660 0.076074 0.012548 0.043717
 0.000942 0.924669 0.073447 0.000942
 0.923181 0.075281 0.000596 0.000942

MOTIF 2-CCCTAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.104398 0.585331 0.205709 0.104562
 0.002257 0.994059 0.001427 0.002257
 0.155962 0.789283 0.052498 0.002257
 0.002257 0.052498 0.001427 0.943818
 0.994889 0.001427 0.001427 0.002257
 0.666996 0.205873 0.001427 0.125704
 0.104562 0.154803 0.175780 0.564855
 0.002257 0.001427 0.994059 0.002257

MOTIF 3-ATCGGCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.793089 0.002749 0.199814 0.004347
 0.201412 0.002749 0.002749 0.793089
 0.004347 0.988557 0.002749 0.004347
 0.004347 0.002749 0.988557 0.004347
 0.300901 0.002749 0.692003 0.004347
 0.004347 0.890182 0.101124 0.004347
 0.004347 0.002749 0.988557 0.004347
 0.891780 0.002749 0.002749 0.102722

MOTIF 4-AAACTGTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 7.7e-001
 0.864280 0.126226 0.000719 0.008776
 0.943553 0.052231 0.003080 0.001136
 0.922811 0.026433 0.002835 0.047921
 0.108714 0.795001 0.043969 0.052316
 0.001136 0.000719 0.078111 0.920034
 0.078529 0.130125 0.770924 0.020422
 0.063516 0.026433 0.000719 0.909332
 0.001136 0.000719 0.126226 0.871919

MOTIF 5-CTTACAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 179 P= 8.0e-001
 0.002226 0.943777 0.051772 0.002226
 0.002226 0.001407 0.001407 0.994960
 0.002226 0.001407 0.001407 0.994960
 0.944595 0.001407 0.051772 0.002226
 0.103117 0.690816 0.203842 0.002226
 0.809520 0.086118 0.051772 0.052590
 0.793339 0.051772 0.051772 0.103117
 0.103117 0.001407 0.051772 0.843704

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11723.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG11723/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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