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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-AWATATWT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 2.5e-001
 0.996727 0.000863 0.000863 0.001547
 0.409795 0.000863 0.000863 0.588478
 0.678927 0.027695 0.291831 0.001547
 0.001547 0.000863 0.260816 0.736775
 0.736775 0.260816 0.000863 0.001547
 0.001547 0.291831 0.027695 0.678927
 0.588478 0.000863 0.000863 0.409795
 0.001547 0.000863 0.000863 0.996727

MOTIF 2-CTTGGCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.002083 0.949666 0.046167 0.002083
 0.002083 0.046167 0.001163 0.950587
 0.002083 0.091315 0.001163 0.905439
 0.002083 0.001163 0.949666 0.047087
 0.047087 0.001163 0.949666 0.002083
 0.002083 0.949666 0.046167 0.002083
 0.815287 0.091315 0.001163 0.092236
 0.228928 0.182344 0.541641 0.047087

MOTIF 3-TAATTAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.002180 0.001216 0.001216 0.995388
 0.933962 0.058319 0.005540 0.002180
 0.901230 0.048295 0.048295 0.002180
 0.002180 0.020217 0.080401 0.897203
 0.002180 0.111566 0.159485 0.726769
 0.853431 0.082334 0.062055 0.002180
 0.872219 0.003355 0.122247 0.002180
 0.002180 0.001216 0.026583 0.970021

MOTIF 4-CAAGTGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.029173 0.925373 0.016282 0.029173
 0.938264 0.016282 0.016282 0.029173
 0.938264 0.016282 0.016282 0.029173
 0.029173 0.016282 0.925373 0.029173
 0.029173 0.016282 0.016282 0.938264
 0.029173 0.016282 0.925373 0.029173
 0.029173 0.925373 0.016282 0.029173
 0.938264 0.016282 0.016282 0.029173

MOTIF 5-AGAACGWG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.711342 0.048483 0.237987 0.002188
 0.002188 0.001221 0.994403 0.002188
 0.806323 0.095745 0.095745 0.002188
 0.900846 0.001221 0.095745 0.002188
 0.002188 0.994403 0.001221 0.002188
 0.049450 0.001221 0.757942 0.191387
 0.380358 0.001221 0.001221 0.617200
 0.049450 0.095821 0.852542 0.002188

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11617.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG11617/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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