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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-MATGTTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 186 P= 1.1e-005
 0.468912 0.462789 0.053072 0.015226
 0.967517 0.000271 0.031905 0.000307
 0.013953 0.000271 0.000271 0.985506
 0.000307 0.000271 0.999114 0.000307
 0.000307 0.000271 0.000271 0.999151
 0.000307 0.000271 0.005132 0.994290
 0.000307 0.000271 0.990608 0.008814
 0.008351 0.991071 0.000271 0.000307

MOTIF 2-RGGGGGAD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 81 P= 2.6e-001
 0.461740 0.000648 0.536875 0.000736
 0.066460 0.058301 0.756620 0.118619
 0.019933 0.077622 0.844118 0.058327
 0.019933 0.039073 0.882666 0.058327
 0.077586 0.031464 0.679649 0.211301
 0.000736 0.058301 0.901771 0.039192
 0.808583 0.034615 0.145302 0.011499
 0.325958 0.000648 0.382313 0.291081

MOTIF 3-CGGCAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 95 P= 3.5e-001
 0.067000 0.842315 0.021441 0.069244
 0.302733 0.040724 0.648375 0.008168
 0.027043 0.008812 0.897304 0.066841
 0.000843 0.966499 0.022718 0.009940
 0.909699 0.022718 0.044764 0.022819
 0.955028 0.022718 0.019393 0.002861
 0.014147 0.940317 0.022718 0.022819
 0.905644 0.044694 0.002760 0.046902

MOTIF 4-ATTTCACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.880185 0.001302 0.039838 0.078675
 0.040015 0.078498 0.001302 0.880185
 0.078675 0.001302 0.001302 0.918722
 0.040015 0.020570 0.001302 0.938114
 0.040015 0.918669 0.001302 0.040015
 0.892566 0.039838 0.001302 0.066295
 0.001478 0.702590 0.022065 0.273866
 0.001478 0.078498 0.001302 0.918722

MOTIF 5-ATTTCGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.993208 0.002166 0.002166 0.002460
 0.002460 0.028713 0.002166 0.966661
 0.002460 0.002166 0.002166 0.993208
 0.002460 0.002166 0.002166 0.993208
 0.002460 0.992914 0.002166 0.002460
 0.002460 0.066294 0.928786 0.002460
 0.066588 0.195171 0.671652 0.066588
 0.130923 0.671860 0.130629 0.066588

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11504.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG11504/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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