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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.28 C 0.22 G 0.22 T 0.28 

MOTIF 1-GYAAACAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 1.2e-002
 0.058534 0.000825 0.939593 0.001047
 0.001047 0.407437 0.000825 0.590691
 0.854612 0.117562 0.026780 0.001047
 0.997302 0.000825 0.000825 0.001047
 0.971348 0.000825 0.026780 0.001047
 0.053399 0.918732 0.000825 0.027043
 0.954045 0.000825 0.018128 0.027002
 0.954045 0.018128 0.000825 0.027002

MOTIF 2-ATACACAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.996092 0.001196 0.001196 0.001517
 0.001517 0.095534 0.114373 0.788576
 0.813852 0.016763 0.092417 0.076968
 0.024282 0.973006 0.001196 0.001517
 0.980525 0.001196 0.001196 0.017084
 0.001517 0.829057 0.016763 0.152663
 0.875965 0.076525 0.038800 0.008709
 0.039121 0.076525 0.152342 0.732011

MOTIF 3-ATTTACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.993524 0.001981 0.001981 0.002514
 0.002514 0.001981 0.064296 0.931209
 0.002514 0.189528 0.126811 0.681147
 0.002514 0.001981 0.001981 0.993524
 0.993524 0.001981 0.001981 0.002514
 0.002514 0.930677 0.064296 0.002514
 0.743662 0.189528 0.001981 0.064828
 0.002514 0.992991 0.001981 0.002514

MOTIF 4-GACCCAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.006687 0.041744 0.892656 0.058912
 0.851984 0.006441 0.087632 0.053944
 0.059005 0.852199 0.029792 0.059005
 0.058912 0.869305 0.029792 0.041991
 0.058958 0.915053 0.000918 0.025070
 0.580723 0.029792 0.116412 0.273073
 0.794698 0.000918 0.087632 0.116752
 0.823198 0.029792 0.000918 0.146092

MOTIF 5-ACGAARAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.993504 0.001988 0.001988 0.002521
 0.002521 0.992970 0.001988 0.002521
 0.002521 0.001988 0.867757 0.127734
 0.825866 0.001988 0.001988 0.170159
 0.967628 0.001988 0.001988 0.028397
 0.492852 0.127201 0.314920 0.065027
 0.993504 0.001988 0.001988 0.002521
 0.002521 0.001988 0.001988 0.993504

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11398.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG11398/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.95 seconds
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