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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.337 C 0.163 G 0.163 T 0.337 

MOTIF 1-TAGCTCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.002577 0.054245 0.054245 0.888933
 0.994931 0.001246 0.001246 0.002577
 0.002577 0.054245 0.781091 0.162086
 0.055576 0.940601 0.001246 0.002577
 0.055576 0.001246 0.001246 0.941932
 0.091718 0.798461 0.054245 0.055576
 0.994931 0.001246 0.001246 0.002577
 0.269288 0.673890 0.001246 0.055576

MOTIF 2-TAAATAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.030636 0.014818 0.014818 0.939727
 0.939727 0.014818 0.014818 0.030636
 0.939727 0.014818 0.014818 0.030636
 0.939727 0.014818 0.014818 0.030636
 0.030636 0.014818 0.014818 0.939727
 0.939727 0.014818 0.014818 0.030636
 0.030636 0.014818 0.923909 0.030636
 0.939727 0.014818 0.014818 0.030636

MOTIF 3-AAAATGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.939727 0.014818 0.014818 0.030636
 0.939727 0.014818 0.014818 0.030636
 0.939727 0.014818 0.014818 0.030636
 0.939727 0.014818 0.014818 0.030636
 0.030636 0.014818 0.014818 0.939727
 0.030636 0.014818 0.923909 0.030636
 0.030636 0.014818 0.014818 0.939727
 0.939727 0.014818 0.014818 0.030636

MOTIF 4-TGCAACAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.002072 0.001002 0.043629 0.953296
 0.216588 0.043629 0.737711 0.002072
 0.002072 0.952226 0.001002 0.044699
 0.879411 0.023970 0.086393 0.010226
 0.992008 0.004917 0.001002 0.002072
 0.002072 0.994853 0.001002 0.002072
 0.806942 0.018649 0.001002 0.173407
 0.130366 0.043629 0.129503 0.696502

MOTIF 5-GGNATTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.001674 0.000810 0.995842 0.001674
 0.001674 0.000810 0.740306 0.257210
 0.208517 0.271555 0.242536 0.277391
 0.721100 0.000810 0.276416 0.001674
 0.001674 0.000810 0.000810 0.996706
 0.001674 0.104121 0.000810 0.893395
 0.001674 0.995842 0.000810 0.001674
 0.001674 0.878275 0.118376 0.001674

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10669.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10669/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.02 seconds
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