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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.353 C 0.147 G 0.147 T 0.353 

MOTIF 1-CTCTTAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 91 P= 1.7e-001
 0.032091 0.922455 0.013364 0.032091
 0.032091 0.013364 0.013364 0.941182
 0.032091 0.922455 0.013364 0.032091
 0.032091 0.013364 0.013364 0.941182
 0.032091 0.013364 0.013364 0.941182
 0.941182 0.013364 0.013364 0.032091
 0.941182 0.013364 0.013364 0.032091
 0.941182 0.013364 0.013364 0.032091

MOTIF 2-AMATATKT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 8.8e-001
 0.992613 0.001678 0.001678 0.004030
 0.419056 0.495970 0.080944 0.004030
 0.904740 0.068231 0.022999 0.004030
 0.004030 0.001678 0.001678 0.992613
 0.992613 0.001678 0.001678 0.004030
 0.004030 0.022999 0.068231 0.904740
 0.004030 0.080944 0.495970 0.419056
 0.004030 0.001678 0.001678 0.992613

MOTIF 3-ATACAATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 178 P= 9.7e-001
 0.881216 0.053131 0.019631 0.046023
 0.024196 0.111077 0.077650 0.787077
 0.798022 0.021285 0.146340 0.034354
 0.000657 0.888771 0.060292 0.050280
 0.852673 0.051265 0.059445 0.036617
 0.830889 0.045440 0.020693 0.102978
 0.026229 0.151750 0.032577 0.789444
 0.586649 0.116634 0.179613 0.117104

MOTIF 4-CAGATGTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003494 0.991556 0.001455 0.003494
 0.787754 0.070069 0.001455 0.140722
 0.140942 0.001455 0.854108 0.003494
 0.856368 0.070069 0.070069 0.003494
 0.003494 0.001455 0.070069 0.924982
 0.003494 0.001455 0.991556 0.003494
 0.209556 0.001455 0.070069 0.718920
 0.003494 0.756648 0.029859 0.209999

MOTIF 5-GAAWTGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003443 0.001434 0.991679 0.003443
 0.889227 0.001434 0.001434 0.107905
 0.926075 0.001434 0.069047 0.003443
 0.653432 0.001434 0.001434 0.343700
 0.003443 0.001434 0.001434 0.993689
 0.003443 0.001434 0.991679 0.003443
 0.003443 0.001434 0.991679 0.003443
 0.993689 0.001434 0.001434 0.003443

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10631.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10631/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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