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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-CGGCGACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.4e-001
 0.001397 0.995699 0.001507 0.001397
 0.001397 0.082156 0.915050 0.001397
 0.041657 0.001507 0.874790 0.082046
 0.163217 0.795521 0.018173 0.023089
 0.001397 0.001507 0.955439 0.041657
 0.793575 0.001507 0.122872 0.082046
 0.001397 0.915050 0.082156 0.001397
 0.793771 0.001507 0.082156 0.122566

MOTIF 2-AAATAAAM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 6.5e-001
 0.996336 0.001252 0.001252 0.001160
 0.996336 0.001252 0.001252 0.001160
 0.660843 0.168890 0.034693 0.135574
 0.001160 0.001252 0.001252 0.996336
 0.895362 0.001252 0.102226 0.001160
 0.929346 0.001252 0.068242 0.001160
 0.996336 0.001252 0.001252 0.001160
 0.658318 0.339270 0.001252 0.001160

MOTIF 3-ATCCGACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.931998 0.001669 0.020127 0.046206
 0.046134 0.001669 0.001669 0.950528
 0.090864 0.816602 0.090987 0.001547
 0.020005 0.752980 0.046256 0.180759
 0.046134 0.001669 0.950650 0.001547
 0.950528 0.046256 0.001669 0.001547
 0.046206 0.771799 0.135861 0.046134
 0.001547 0.046256 0.932192 0.020005

MOTIF 4-TGATAAKG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 8.8e-001
 0.120276 0.145960 0.001081 0.732683
 0.001002 0.001081 0.996915 0.001002
 0.996836 0.001081 0.001081 0.001002
 0.001002 0.001081 0.082919 0.914999
 0.852284 0.001081 0.087794 0.058841
 0.897875 0.001081 0.071122 0.029921
 0.029875 0.186926 0.303451 0.479749
 0.029875 0.001081 0.968042 0.001002

MOTIF 5-ATCTAGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.928756 0.002404 0.002404 0.066436
 0.002228 0.002404 0.131027 0.864341
 0.002228 0.902352 0.028984 0.066436
 0.066436 0.002404 0.002404 0.928756
 0.864341 0.002404 0.002404 0.130851
 0.002228 0.002404 0.864517 0.130851
 0.002228 0.993141 0.002404 0.002228
 0.066436 0.066612 0.736101 0.130851

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10543.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10543/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.99 seconds
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