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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-ATACATGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 180 P= 1.0e-004
 0.496692 0.221968 0.050018 0.231322
 0.004701 0.000319 0.000319 0.994661
 0.989497 0.000319 0.005482 0.004701
 0.000426 0.985554 0.000319 0.013701
 0.998936 0.000319 0.000319 0.000426
 0.000426 0.000319 0.000319 0.998936
 0.000426 0.000319 0.998829 0.000426
 0.102866 0.063536 0.833172 0.000426

MOTIF 2-TAATAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.002847 0.002128 0.002128 0.992897
 0.992897 0.002128 0.002128 0.002847
 0.992897 0.002128 0.002128 0.002847
 0.002847 0.002128 0.002128 0.992897
 0.785334 0.209691 0.002128 0.002847
 0.964348 0.002128 0.030678 0.002847
 0.635414 0.002128 0.071094 0.291364
 0.992897 0.002128 0.002128 0.002847

MOTIF 3-AGAGGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.795313 0.087460 0.000888 0.116339
 0.001187 0.000888 0.996738 0.001187
 0.717514 0.049268 0.058510 0.174707
 0.058809 0.058417 0.881586 0.001187
 0.001187 0.087460 0.910165 0.001187
 0.058809 0.000888 0.927208 0.013095
 0.939508 0.000888 0.000888 0.058717
 0.697048 0.144804 0.000888 0.157260

MOTIF 4-AGAAGCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.871680 0.001275 0.042586 0.084460
 0.001705 0.042652 0.936836 0.018806
 0.954434 0.001275 0.001275 0.043016
 0.867850 0.042586 0.018376 0.071188
 0.001705 0.042586 0.954004 0.001705
 0.005499 0.950211 0.001275 0.043016
 0.871680 0.001275 0.042586 0.084460
 0.018806 0.687837 0.125607 0.167749

MOTIF 5-CTGCGAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002915 0.921371 0.072799 0.002915
 0.144381 0.002179 0.002179 0.851260
 0.002915 0.002179 0.991991 0.002915
 0.002915 0.991991 0.002179 0.002915
 0.144381 0.002179 0.850524 0.002915
 0.780640 0.072799 0.143646 0.002915
 0.002915 0.143646 0.779905 0.073535
 0.002915 0.002179 0.921371 0.073535

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10431.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10431/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.68 seconds
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