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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-GTAGGGBA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 124 P= 5.3e-003
 0.009389 0.000279 0.989961 0.000371
 0.064942 0.108493 0.013806 0.812759
 0.971900 0.027450 0.000279 0.000371
 0.000371 0.000279 0.998978 0.000371
 0.099815 0.063873 0.835941 0.000371
 0.067852 0.000279 0.861356 0.070512
 0.040263 0.293962 0.425973 0.239802
 0.809391 0.095981 0.085239 0.009389

MOTIF 2-CAAGTGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.001206 0.807887 0.118644 0.072263
 0.909009 0.030199 0.059586 0.001206
 0.893226 0.016690 0.059586 0.030498
 0.001206 0.089067 0.896396 0.013332
 0.001206 0.013033 0.030199 0.955562
 0.006808 0.030199 0.959097 0.003895
 0.118942 0.089210 0.761350 0.030498
 0.089365 0.867103 0.030199 0.013332

MOTIF 3-AAGCGCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.948383 0.048242 0.001449 0.001926
 0.845698 0.048242 0.095185 0.010876
 0.048718 0.001449 0.854171 0.095661
 0.001926 0.994699 0.001449 0.001926
 0.001926 0.001449 0.994699 0.001926
 0.048718 0.854322 0.048242 0.048718
 0.901440 0.001449 0.095185 0.001926
 0.095661 0.666094 0.048242 0.190003

MOTIF 4-CGGGCATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.001743 0.697297 0.214396 0.086564
 0.001743 0.001312 0.952860 0.044085
 0.072961 0.001312 0.923985 0.001743
 0.086564 0.043722 0.867971 0.001743
 0.001743 0.995203 0.001312 0.001743
 0.995634 0.001312 0.001312 0.001743
 0.001743 0.001312 0.001312 0.995634
 0.839731 0.072529 0.043654 0.044085

MOTIF 5-AAACCGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.859825 0.068716 0.068716 0.002743
 0.926476 0.002065 0.002065 0.069395
 0.926476 0.002065 0.068716 0.002743
 0.002743 0.992449 0.002065 0.002743
 0.002743 0.992449 0.002065 0.002743
 0.002743 0.002065 0.925797 0.069395
 0.926476 0.068716 0.002065 0.002743
 0.164428 0.202664 0.029656 0.603252

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10274.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10274/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.95 seconds
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