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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.346 C 0.154 G 0.154 T 0.346 

MOTIF 1-TAAACTAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 9.8e-002
 0.077486 0.210256 0.153983 0.558275
 0.952501 0.003968 0.000413 0.043118
 0.863085 0.015804 0.002120 0.118991
 0.867366 0.101152 0.030554 0.000929
 0.000929 0.997730 0.000413 0.000929
 0.051342 0.023770 0.136569 0.788319
 0.821508 0.003968 0.103558 0.070966
 0.857265 0.003968 0.000413 0.138354

MOTIF 2-AAATATAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 5.0e-001
 0.966180 0.001067 0.001067 0.031685
 0.949112 0.047418 0.001067 0.002402
 0.892158 0.049166 0.033133 0.025542
 0.002402 0.001067 0.091260 0.905270
 0.879802 0.029927 0.087869 0.002402
 0.002402 0.069025 0.049166 0.879406
 0.889756 0.106774 0.001067 0.002402
 0.002402 0.001067 0.088577 0.907953

MOTIF 3-GATCCCAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.031473 0.013982 0.923073 0.031473
 0.940564 0.013982 0.013982 0.031473
 0.031473 0.013982 0.013982 0.940564
 0.031473 0.923073 0.013982 0.031473
 0.031473 0.923073 0.013982 0.031473
 0.031473 0.923073 0.013982 0.031473
 0.940564 0.013982 0.013982 0.031473
 0.031473 0.013982 0.013982 0.940564

MOTIF 4-AGGTCACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.749019 0.168425 0.056784 0.025771
 0.002775 0.056784 0.770473 0.169967
 0.002775 0.001233 0.993218 0.002775
 0.114057 0.056784 0.024229 0.804929
 0.058326 0.882114 0.001233 0.058326
 0.994760 0.001233 0.001233 0.002775
 0.114057 0.881936 0.001233 0.002775
 0.994760 0.001233 0.001233 0.002775

MOTIF 5-GGCTTATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.003291 0.001462 0.991955 0.003291
 0.135299 0.001462 0.859947 0.003291
 0.003291 0.991955 0.001462 0.003291
 0.069189 0.067360 0.067360 0.796091
 0.069189 0.001462 0.001462 0.927886
 0.927780 0.001462 0.067466 0.003291
 0.268590 0.067360 0.001462 0.662588
 0.861989 0.067360 0.001462 0.069189

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10147.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG10147/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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