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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-GAAAGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 187 P= 2.0e-008
 0.082183 0.001637 0.915886 0.000294
 0.982482 0.009658 0.007566 0.000294
 0.959281 0.000235 0.032859 0.007624
 0.962512 0.014920 0.007590 0.014979
 0.023605 0.009658 0.959087 0.007650
 0.037305 0.029577 0.026574 0.906544
 0.090153 0.008455 0.851383 0.050009
 0.939015 0.006399 0.003612 0.050975

MOTIF 2-ARCGAAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 2.4e-001
 0.997425 0.000793 0.000793 0.000989
 0.413234 0.000793 0.505588 0.080385
 0.000989 0.814497 0.000793 0.183721
 0.167555 0.000793 0.830662 0.000989
 0.972718 0.000793 0.000793 0.025697
 0.997425 0.000793 0.000793 0.000989
 0.997425 0.000793 0.000793 0.000989
 0.000989 0.000793 0.997228 0.000989

MOTIF 3-CCCCTCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.001565 0.995616 0.001254 0.001565
 0.257340 0.622539 0.001254 0.118867
 0.040708 0.854034 0.084154 0.021105
 0.001565 0.956536 0.040334 0.001565
 0.021105 0.001254 0.083162 0.894479
 0.040645 0.956536 0.001254 0.001565
 0.001565 0.897916 0.079413 0.021105
 0.145455 0.773567 0.079413 0.001565

MOTIF 4-ATGCAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.0e-001
 0.997358 0.000813 0.000813 0.001015
 0.001015 0.000813 0.280123 0.718048
 0.064465 0.077100 0.857420 0.001015
 0.001015 0.961316 0.000813 0.036855
 0.742983 0.000813 0.000813 0.255390
 0.777050 0.068793 0.000813 0.153344
 0.844948 0.000813 0.000813 0.153425
 0.001015 0.127795 0.000813 0.870377

MOTIF 5-CCAATCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 8.8e-001
 0.003279 0.990814 0.002627 0.003279
 0.003279 0.990814 0.002627 0.003279
 0.827701 0.002627 0.166393 0.003279
 0.663935 0.002627 0.330158 0.003279
 0.085162 0.002627 0.002627 0.909583
 0.003279 0.990814 0.002627 0.003279
 0.003279 0.990814 0.002627 0.003279
 0.003279 0.908931 0.002627 0.085162

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Blimp-1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Blimp-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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