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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.287 C 0.213 G 0.213 T 0.287 

MOTIF 1-ACGTCAYC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 4.1e-003
 0.930326 0.034445 0.034527 0.000703
 0.034655 0.751551 0.000520 0.213274
 0.253158 0.000520 0.745619 0.000703
 0.000703 0.167109 0.000520 0.831668
 0.024668 0.974110 0.000520 0.000703
 0.998258 0.000520 0.000520 0.000703
 0.000703 0.364432 0.089937 0.544928
 0.000703 0.878198 0.090327 0.030771

MOTIF 2-AAACTAAB STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.890972 0.106494 0.001078 0.001457
 0.981841 0.015624 0.001078 0.001457
 0.996388 0.001078 0.001078 0.001457
 0.001457 0.871433 0.001078 0.126033
 0.001457 0.001078 0.232351 0.765115
 0.866455 0.001078 0.131011 0.001457
 0.796392 0.001078 0.201073 0.001457
 0.001457 0.321339 0.396904 0.280300

MOTIF 3-WCKGCMGW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.564827 0.126537 0.001126 0.307510
 0.263251 0.734100 0.001126 0.001522
 0.001522 0.045443 0.524407 0.428627
 0.001522 0.001126 0.959112 0.038240
 0.038240 0.959112 0.001126 0.001522
 0.428627 0.524407 0.045443 0.001522
 0.001522 0.001126 0.734100 0.263251
 0.307510 0.001126 0.126537 0.564827

MOTIF 4-ACAGAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.991566 0.002516 0.002516 0.003402
 0.003402 0.990681 0.002516 0.003402
 0.991566 0.002516 0.002516 0.003402
 0.003402 0.002516 0.990681 0.003402
 0.909528 0.002516 0.084554 0.003402
 0.744660 0.002516 0.002516 0.250308
 0.745190 0.002516 0.084554 0.167740
 0.991566 0.002516 0.002516 0.003402

MOTIF 5-ATCGATAR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.992248 0.002313 0.002313 0.003127
 0.003127 0.002313 0.002313 0.992248
 0.003127 0.991434 0.002313 0.003127
 0.003127 0.002313 0.991434 0.003127
 0.992248 0.002313 0.002313 0.003127
 0.003127 0.002313 0.002313 0.992248
 0.992248 0.002313 0.002313 0.003127
 0.459243 0.002313 0.535317 0.003127

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf3.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Atf3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.94 seconds
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