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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-CACTGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 2.4e-001
 0.001939 0.879656 0.044155 0.074250
 0.995736 0.001162 0.001162 0.001939
 0.088062 0.865844 0.044155 0.001939
 0.001939 0.001162 0.001162 0.995736
 0.019736 0.018960 0.873242 0.088062
 0.776141 0.105454 0.073473 0.044931
 0.174742 0.087286 0.736033 0.001939
 0.909613 0.087286 0.001162 0.001939

MOTIF 2-CAAAATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 6.7e-001
 0.001682 0.995628 0.001008 0.001682
 0.933572 0.001008 0.001008 0.064411
 0.813724 0.063737 0.001008 0.121531
 0.959006 0.001008 0.038304 0.001682
 0.905829 0.001008 0.091481 0.001682
 0.001682 0.001008 0.091481 0.905829
 0.819793 0.065269 0.113255 0.001682
 0.857765 0.001008 0.001008 0.140219

MOTIF 3-AGTGGCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.0e-001
 0.669107 0.000804 0.298909 0.031180
 0.001341 0.090129 0.817862 0.090667
 0.031085 0.000804 0.042860 0.925251
 0.001341 0.000804 0.936931 0.060924
 0.031085 0.060386 0.907188 0.001341
 0.060876 0.847461 0.090321 0.001341
 0.001341 0.000804 0.966770 0.031085
 0.001341 0.805550 0.102442 0.090667

MOTIF 4-CGCCGCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.064670 0.868986 0.001673 0.064670
 0.002791 0.001673 0.992746 0.002791
 0.002791 0.930866 0.063553 0.002791
 0.064670 0.807106 0.063553 0.064670
 0.002791 0.001673 0.992746 0.002791
 0.064670 0.930866 0.001673 0.002791
 0.064670 0.806907 0.001673 0.126749
 0.002791 0.806907 0.125632 0.064670

MOTIF 5-GCCGTTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.106236 0.062247 0.584218 0.247299
 0.001384 0.768618 0.062296 0.167703
 0.032068 0.965719 0.000830 0.001384
 0.001384 0.154348 0.812201 0.032068
 0.001384 0.062296 0.031513 0.904807
 0.001384 0.062197 0.062197 0.874222
 0.154852 0.812250 0.000830 0.032068
 0.032117 0.658337 0.154348 0.155199

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf-2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Atf-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	2.17 seconds
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