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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-AGRTGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 3.0e-001
 0.883922 0.000633 0.042716 0.072729
 0.000884 0.000633 0.997600 0.000884
 0.515711 0.000633 0.482773 0.000884
 0.241231 0.084833 0.126916 0.547020
 0.000884 0.000633 0.997600 0.000884
 0.042933 0.000633 0.744965 0.211469
 0.228774 0.748685 0.000633 0.021908
 0.064263 0.084799 0.850054 0.000884

MOTIF 2-ACRTTTTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.993807 0.001824 0.001824 0.002546
 0.002546 0.993085 0.001824 0.002546
 0.566852 0.001824 0.428778 0.002546
 0.002546 0.001824 0.001824 0.993807
 0.002546 0.001824 0.001824 0.993807
 0.002546 0.103703 0.122968 0.770783
 0.002546 0.001824 0.001824 0.993807
 0.002546 0.993085 0.001824 0.002546

MOTIF 3-CTGGCAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.002755 0.992516 0.001974 0.002755
 0.002755 0.001974 0.001974 0.993298
 0.002755 0.001974 0.992516 0.002755
 0.200047 0.001974 0.795224 0.002755
 0.002755 0.926964 0.001974 0.068308
 0.796006 0.001974 0.001974 0.200047
 0.993298 0.001974 0.001974 0.002755
 0.002755 0.992516 0.001974 0.002755

MOTIF 4-MTATCGAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 8.8e-001
 0.557877 0.395102 0.001313 0.045708
 0.001832 0.001313 0.001313 0.995543
 0.995543 0.001313 0.001313 0.001832
 0.045426 0.001313 0.088641 0.864620
 0.045426 0.951429 0.001313 0.001832
 0.001832 0.044907 0.951429 0.001832
 0.820886 0.001313 0.175969 0.001832
 0.001832 0.001313 0.044977 0.951879

MOTIF 5-CGTACAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.066856 0.864357 0.066091 0.002696
 0.002696 0.001932 0.837036 0.158336
 0.002696 0.001932 0.066091 0.929281
 0.929281 0.001932 0.001932 0.066856
 0.002696 0.864151 0.130457 0.002696
 0.993440 0.001932 0.001932 0.002696
 0.929281 0.066091 0.001932 0.002696
 0.131221 0.001932 0.195030 0.671817

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Antp.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Antp/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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