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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-GCCATAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.2e-001
 0.001770 0.001084 0.995375 0.001770
 0.001770 0.782588 0.001084 0.214557
 0.001770 0.995375 0.001084 0.001770
 0.979680 0.001084 0.001084 0.018152
 0.001770 0.001084 0.001084 0.996061
 0.831432 0.086314 0.080484 0.001770
 0.956489 0.040656 0.001084 0.001770
 0.860580 0.017466 0.001084 0.120870

MOTIF 2-ACCAACCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.865277 0.001758 0.001758 0.131207
 0.002871 0.992500 0.001758 0.002871
 0.002871 0.799996 0.130094 0.067039
 0.736734 0.001758 0.258637 0.002871
 0.800902 0.001758 0.001758 0.195582
 0.002871 0.965937 0.001758 0.029434
 0.002871 0.992500 0.001758 0.002871
 0.800902 0.001758 0.001758 0.195582

MOTIF 3-TCGTWAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.001427 0.032829 0.000874 0.964870
 0.001427 0.996271 0.000874 0.001427
 0.001427 0.000874 0.996271 0.001427
 0.001427 0.110100 0.032777 0.855696
 0.353373 0.064783 0.032777 0.549066
 0.943165 0.000874 0.054534 0.001427
 0.996825 0.000874 0.000874 0.001427
 0.714291 0.096790 0.187491 0.001427

MOTIF 4-ACATTACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.854402 0.000971 0.000971 0.143655
 0.001586 0.995856 0.000971 0.001586
 0.711931 0.107466 0.000971 0.179632
 0.001586 0.107466 0.142983 0.747964
 0.001586 0.000971 0.000971 0.996471
 0.783368 0.072006 0.072006 0.072621
 0.001586 0.995856 0.000971 0.001586
 0.748021 0.000971 0.178386 0.072621

MOTIF 5-CCTGTCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.079346 0.839227 0.002081 0.079346
 0.003398 0.991124 0.002081 0.003398
 0.003398 0.002081 0.078029 0.916493
 0.003398 0.078029 0.915176 0.003398
 0.003398 0.002081 0.002081 0.992441
 0.079346 0.839227 0.002081 0.079346
 0.916493 0.002081 0.078029 0.003398
 0.155538 0.002081 0.838983 0.003398

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Abd-B.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Abd-B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.53 seconds
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