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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.298 C 0.202 G 0.202 T 0.298 

MOTIF 1-WGYAAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 184 P= 1.7e-004
 0.413999 0.077091 0.119146 0.389764
 0.000349 0.037300 0.962001 0.000349
 0.000349 0.355822 0.000237 0.643592
 0.908275 0.091140 0.000237 0.000349
 0.982911 0.000237 0.016503 0.000349
 0.999178 0.000237 0.000237 0.000349
 0.000349 0.259134 0.000237 0.740280
 0.999178 0.000237 0.000237 0.000349

MOTIF 2-TAAATAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 3.7e-002
 0.001186 0.118642 0.274896 0.605277
 0.997207 0.000804 0.000804 0.001186
 0.997207 0.000804 0.000804 0.001186
 0.997207 0.000804 0.000804 0.001186
 0.001186 0.272160 0.133992 0.592662
 0.997207 0.000804 0.000804 0.001186
 0.997207 0.000804 0.000804 0.001186
 0.941867 0.056143 0.000804 0.001186

MOTIF 3-HTCCMTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 3.7e-002
 0.318950 0.411471 0.000925 0.268655
 0.268604 0.000925 0.000925 0.729546
 0.001365 0.996346 0.000925 0.001365
 0.001365 0.697414 0.000925 0.300296
 0.618394 0.347573 0.032668 0.001365
 0.271233 0.000925 0.000925 0.726917
 0.001365 0.996346 0.000925 0.001365
 0.001365 0.032668 0.000925 0.965042

MOTIF 4-GACCGACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.001905 0.134347 0.817539 0.046209
 0.906904 0.001291 0.089900 0.001905
 0.134818 0.773377 0.045596 0.046209
 0.046209 0.861986 0.089900 0.001905
 0.090656 0.001291 0.906148 0.001905
 0.862457 0.045596 0.090043 0.001905
 0.001905 0.861844 0.045596 0.090656
 0.001905 0.089900 0.222813 0.685382

MOTIF 5-AGCTGCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.942838 0.001513 0.053418 0.002232
 0.002232 0.023000 0.920632 0.054137
 0.002232 0.942119 0.001513 0.054137
 0.002232 0.001513 0.053418 0.942838
 0.075623 0.053418 0.868727 0.002232
 0.002232 0.802746 0.088814 0.106209
 0.002232 0.942119 0.053418 0.002232
 0.158449 0.001513 0.157730 0.682309

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ATbp.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ATbp/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.81 seconds
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